Variant report

Variant	rs34384576
Chromosome Location	chr3:150085242-150085243
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150081211..150094856-chr3:150124384..150132921,41	MCF-7	breast:
2	chr3:150081035..150094397-chr3:150122156..150134666,40	MCF-7	breast:
3	chr3:150081232..150084545-chr3:150085072..150089813,5	K562	blood:
4	chr3:150074801..150076915-chr3:150084474..150086782,2	MCF-7	breast:
5	chr3:150061806..150067641-chr3:150085085..150089827,11	MCF-7	breast:
6	chr3:150082769..150087099-chr3:150088300..150090870,4	K562	blood:
7	chr3:150081232..150084840-chr3:150085072..150088254,3	K562	blood:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11706784	0.85[ASN][1000 genomes]
rs11719654	0.88[ASN][1000 genomes]
rs12054166	0.85[ASN][1000 genomes]
rs13069723	0.85[ASN][1000 genomes]
rs13092207	0.88[ASN][1000 genomes]
rs13092341	0.96[ASN][1000 genomes]
rs16862648	0.85[ASN][1000 genomes]
rs2068659	0.85[ASN][1000 genomes]
rs28517277	0.92[ASN][1000 genomes]
rs33988810	0.88[ASN][1000 genomes]
rs34192407	0.88[ASN][1000 genomes]
rs34518530	0.85[ASN][1000 genomes]
rs34616287	0.88[ASN][1000 genomes]
rs34991086	0.85[ASN][1000 genomes]
rs35704634	0.96[ASN][1000 genomes]
rs35725711	0.88[ASN][1000 genomes]
rs35982655	0.85[ASN][1000 genomes]
rs56040746	0.81[ASN][1000 genomes]
rs62269065	0.85[ASN][1000 genomes]
rs6763024	0.81[ASN][1000 genomes]
rs9682043	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150074000-150086600	Weak transcription	HUVEC	blood vessel
2	chr3:150081200-150088200	Weak transcription	Stomach Mucosa	stomach
3	chr3:150082400-150089400	Weak transcription	HepG2	liver
4	chr3:150083200-150085600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:150083200-150088000	Weak transcription	Esophagus	oesophagus
6	chr3:150083200-150088200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:150083200-150088200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:150083400-150085800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:150083400-150085800	Weak transcription	NHLF	lung
10	chr3:150083400-150086600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:150083400-150086600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:150083600-150087200	Weak transcription	HSMMtube	muscle
13	chr3:150083800-150085600	Weak transcription	Osteobl	bone
14	chr3:150083800-150086800	Weak transcription	HMEC	breast
15	chr3:150083800-150087400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:150083800-150087400	Weak transcription	NH-A	brain
17	chr3:150084000-150085400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:150084000-150085400	Weak transcription	NHDF-Ad	bronchial
19	chr3:150084000-150085800	Weak transcription	A549	lung
20	chr3:150084000-150086600	Weak transcription	K562	blood
21	chr3:150084000-150086800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr3:150084000-150087800	Weak transcription	HSMM	muscle
23	chr3:150084200-150086600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:150084200-150086600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:150084200-150086600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:150084200-150086600	Weak transcription	NHEK	skin
27	chr3:150084600-150087800	Weak transcription	Fetal Kidney	kidney
28	chr3:150084600-150088000	Weak transcription	Right Atrium	heart
29	chr3:150085000-150087600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr3:150085200-150086000	Enhancers	Fetal Lung	lung
31	chr3:150085200-150087800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr3:150085200-150088000	Enhancers	Hela-S3	cervix

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