Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:150181935..150183846-chr3:150195693..150198379,2	MCF-7	breast:
2	chr3:150125653..150129014-chr3:150192577..150196222,3	K562	blood:
3	chr3:150143267..150145656-chr3:150195329..150196876,2	K562	blood:
4	chr3:150177079..150178805-chr3:150195131..150197067,2	K562	blood:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11706784	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11719654	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12054166	0.88[ASN][1000 genomes]
rs13069723	0.88[ASN][1000 genomes]
rs13092207	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13092341	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16862648	0.88[ASN][1000 genomes]
rs2068659	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28517277	0.81[ASN][1000 genomes]
rs33988810	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34192407	0.91[ASN][1000 genomes]
rs34384576	0.81[ASN][1000 genomes]
rs34518530	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34616287	0.91[ASN][1000 genomes]
rs34991086	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35500085	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35704634	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35725711	0.91[ASN][1000 genomes]
rs35982655	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62269065	0.88[ASN][1000 genomes]
rs6763024	0.84[ASN][1000 genomes]
rs9682043	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877645	chr3:150103135-150212698	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150177000-150200600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:150179200-150201000	Weak transcription	Fetal Lung	lung
3	chr3:150187400-150196200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:150187800-150201400	Weak transcription	HSMMtube	muscle
5	chr3:150188200-150197600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:150188200-150218800	Weak transcription	HSMM	muscle
7	chr3:150194600-150204800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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