Variant report

Variant	rs35704634
Chromosome Location	chr3:150088052-150088053
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150068040..150070042-chr3:150085937..150088892,3	MCF-7	breast:
2	chr3:150086902..150089689-chr3:150137707..150139758,2	MCF-7	breast:
3	chr3:150074641..150076936-chr3:150087401..150089500,2	K562	blood:
4	chr3:150081211..150094856-chr3:150124384..150132921,41	MCF-7	breast:
5	chr3:150081035..150094397-chr3:150122156..150134666,40	MCF-7	breast:
6	chr3:150048454..150052986-chr3:150087441..150091214,5	MCF-7	breast:
7	chr3:150086784..150089218-chr3:150089694..150091385,2	MCF-7	breast:
8	chr3:150081232..150084545-chr3:150085072..150089813,5	K562	blood:
9	chr3:150086785..150088735-chr3:150127952..150130742,2	K562	blood:
10	chr3:150087821..150092434-chr3:150124349..150127754,6	K562	blood:
11	chr3:150021733..150026576-chr3:150087273..150091284,6	MCF-7	breast:
12	chr3:150034078..150036042-chr3:150087927..150090147,2	MCF-7	breast:
13	chr3:150031134..150033723-chr3:150086992..150089751,2	MCF-7	breast:
14	chr3:150010377..150012973-chr3:150087028..150089322,2	MCF-7	breast:
15	chr3:150086519..150091866-chr3:150093461..150097312,5	K562	blood:
16	chr3:149953883..149958002-chr3:150086576..150089576,4	MCF-7	breast:
17	chr3:150061806..150067641-chr3:150085085..150089827,11	MCF-7	breast:
18	chr3:149954498..149958099-chr3:150086943..150091403,7	MCF-7	breast:
19	chr3:150086925..150089531-chr3:150177059..150179337,2	K562	blood:
20	chr3:150087949..150089476-chr3:150093898..150096286,2	MCF-7	breast:
21	chr3:150087084..150094553-chr3:150124263..150130094,16	K562	blood:
22	chr3:150086378..150089997-chr3:150256465..150259602,3	MCF-7	breast:
23	chr3:150087916..150090460-chr3:150152430..150154050,2	K562	blood:
24	chr3:150041773..150044252-chr3:150087797..150089469,2	MCF-7	breast:
25	chr3:150033113..150037399-chr3:150086580..150091176,6	MCF-7	breast:
26	chr3:150081232..150084840-chr3:150085072..150088254,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction
ENSG00000244541	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11706784	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11719654	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12054166	0.88[ASN][1000 genomes]
rs13069723	0.81[ASN][1000 genomes]
rs13092207	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13092341	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862648	0.81[ASN][1000 genomes]
rs2068659	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2122474	0.85[AFR][1000 genomes]
rs28517277	0.89[ASN][1000 genomes]
rs33988810	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34192407	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34384576	0.96[ASN][1000 genomes]
rs34518530	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34616287	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34749904	0.84[AFR][1000 genomes]
rs34991086	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35725711	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35982655	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56040746	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62269065	0.81[ASN][1000 genomes]
rs9682043	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150081200-150088200	Weak transcription	Stomach Mucosa	stomach
2	chr3:150082400-150089400	Weak transcription	HepG2	liver
3	chr3:150083200-150088200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:150083200-150088200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:150085800-150088800	Enhancers	Placenta	Placenta
6	chr3:150086200-150102200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:150087000-150088200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:150087200-150088200	Weak transcription	K562	blood
9	chr3:150087200-150089000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:150087200-150089200	Enhancers	Fetal Muscle Leg	muscle
11	chr3:150087600-150088200	Active TSS	HSMMtube	muscle
12	chr3:150087600-150089200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr3:150087600-150089600	Flanking Active TSS	HUVEC	blood vessel
14	chr3:150087600-150090200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:150087600-150090200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:150087800-150088200	Active TSS	Stomach Smooth Muscle	stomach
17	chr3:150087800-150088400	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr3:150087800-150088400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr3:150087800-150088400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:150087800-150088400	Active TSS	HSMM	muscle
21	chr3:150087800-150088600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr3:150087800-150088800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:150087800-150088800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:150087800-150088800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr3:150087800-150088800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr3:150087800-150089800	Flanking Active TSS	NH-A	brain
27	chr3:150087800-150089800	Active TSS	NHEK	skin
28	chr3:150087800-150090000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:150087800-150090000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:150087800-150090000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:150087800-150090200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:150087800-150090200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:150088000-150088200	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr3:150088000-150088200	Active TSS	iPS-15b Cell Line	embryonic stem cell
35	chr3:150088000-150088200	Active TSS	Brain Cingulate Gyrus	brain
36	chr3:150088000-150088200	Enhancers	Fetal Stomach	stomach
37	chr3:150088000-150088400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
38	chr3:150088000-150088400	Active TSS	H9 Cell Line	embryonic stem cell
39	chr3:150088000-150088400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:150088000-150088400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:150088000-150088400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr3:150088000-150088400	Flanking Active TSS	Brain Germinal Matrix	brain
43	chr3:150088000-150088400	Enhancers	Esophagus	oesophagus
44	chr3:150088000-150088400	Active TSS	Fetal Intestine Small	intestine
45	chr3:150088000-150088400	Flanking Active TSS	Left Ventricle	heart
46	chr3:150088000-150088400	Active TSS	A549	lung
47	chr3:150088000-150088400	Active TSS	HMEC	breast
48	chr3:150088000-150088600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr3:150088000-150088600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr3:150088000-150088600	Active TSS	Brain Angular Gyrus	brain

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