Variant report

Variant	rs34991086
Chromosome Location	chr3:150092781-150092782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150081211..150094856-chr3:150124384..150132921,41	MCF-7	breast:
2	chr3:150081035..150094397-chr3:150122156..150134666,40	MCF-7	breast:
3	chr3:150092338..150094835-chr3:150138440..150140402,2	MCF-7	breast:
4	chr3:150091318..150093525-chr3:150137664..150139823,2	K562	blood:
5	chr3:150083276..150085160-chr3:150092333..150095234,2	K562	blood:
6	chr3:150064599..150068049-chr3:150092339..150097012,5	MCF-7	breast:
7	chr3:150087084..150094553-chr3:150124263..150130094,16	K562	blood:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11706784	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11719654	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12054166	0.92[ASN][1000 genomes]
rs13069723	0.84[ASN][1000 genomes]
rs13092207	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13092341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16862648	0.84[ASN][1000 genomes]
rs2068659	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33988810	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34192407	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34384576	0.85[ASN][1000 genomes]
rs34518530	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34616287	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35704634	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35725711	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35982655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56040746	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62269065	0.84[ASN][1000 genomes]
rs6763024	0.81[ASN][1000 genomes]
rs9682043	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150086200-150102200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:150088800-150093800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:150089400-150094200	Weak transcription	Small Intestine	intestine
4	chr3:150089600-150094200	Weak transcription	Placenta	Placenta
5	chr3:150089600-150097400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:150089800-150092800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:150089800-150094000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:150089800-150094000	Weak transcription	Brain Germinal Matrix	brain
9	chr3:150089800-150094000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:150089800-150094200	Weak transcription	Left Ventricle	heart
11	chr3:150089800-150094600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:150090000-150093000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:150090000-150093800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:150090200-150093000	Weak transcription	Fetal Intestine Large	intestine
15	chr3:150090200-150094200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr3:150090200-150124600	Weak transcription	Aorta	Aorta
17	chr3:150090400-150093000	Weak transcription	K562	blood
18	chr3:150090400-150093800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:150090400-150093800	Weak transcription	Liver	Liver
20	chr3:150090400-150094200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr3:150090600-150092800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:150090600-150093000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:150090600-150093000	Weak transcription	Fetal Intestine Small	intestine
24	chr3:150090600-150093200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:150090600-150093400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:150090600-150094200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr3:150090600-150094200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr3:150090800-150092800	Weak transcription	Hela-S3	cervix
29	chr3:150090800-150093000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:150090800-150093000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr3:150090800-150093400	Weak transcription	Adipose Nuclei	Adipose
32	chr3:150090800-150093400	Weak transcription	HepG2	liver
33	chr3:150090800-150093800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr3:150090800-150093800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr3:150090800-150094000	Weak transcription	Fetal Heart	heart
36	chr3:150090800-150094200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr3:150090800-150094200	Weak transcription	Psoas Muscle	Psoas
38	chr3:150090800-150094200	Weak transcription	Right Atrium	heart
39	chr3:150090800-150096000	Weak transcription	Gastric	stomach
40	chr3:150090800-150096000	Weak transcription	Stomach Mucosa	stomach
41	chr3:150090800-150096200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr3:150090800-150096600	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr3:150090800-150097400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr3:150090800-150107000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:150090800-150108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr3:150090800-150111000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr3:150090800-150111000	Weak transcription	NHEK	skin
48	chr3:150091200-150093200	Weak transcription	Osteobl	bone
49	chr3:150091200-150094000	Weak transcription	HSMM	muscle
50	chr3:150091800-150093400	Weak transcription	Monocytes-CD14+_RO01746	blood

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