Variant report

Variant	rs28688912
Chromosome Location	chr15:92388783-92388784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28399101	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28478969	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28536772	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7179294	1.00[ASN][1000 genomes]
rs8025901	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92383400-92389800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:92387800-92388800	Enhancers	Brain Cingulate Gyrus	brain
3	chr15:92388000-92390600	Enhancers	Brain Hippocampus Middle	brain
4	chr15:92388200-92389200	Enhancers	Ovary	ovary
5	chr15:92388400-92389000	Enhancers	Brain Angular Gyrus	brain
6	chr15:92388600-92388800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:92388600-92388800	Flanking Active TSS	Brain Substantia Nigra	brain
8	chr15:92388600-92389000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:92388600-92389200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
10	chr15:92388600-92389200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:92388600-92389800	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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