Variant report

Variant	rs7179294
Chromosome Location	chr15:92398483-92398484
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92395543..92397547-chr15:92397890..92399394,2	K562	blood:
2	chr15:92398412..92399161-chr15:92620330..92621178,2	MCF-7	breast:
3	chr15:92397715..92399239-chr15:92515184..92517679,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11852976	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11858120	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11858157	0.93[EUR][1000 genomes]
rs12907294	0.88[EUR][1000 genomes]
rs28478969	1.00[ASN][1000 genomes]
rs28504271	0.92[EUR][1000 genomes]
rs28517863	0.91[EUR][1000 genomes]
rs28534923	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28592114	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28688912	1.00[ASN][1000 genomes]
rs4075845	0.99[EUR][1000 genomes]
rs7162027	0.97[EUR][1000 genomes]
rs7172169	0.90[EUR][1000 genomes]
rs7173207	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8025901	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3324058	chr15:92395773-92398821	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92395600-92398600	Active TSS	Aorta	Aorta
2	chr15:92395800-92398800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr15:92396000-92398800	Active TSS	Rectal Smooth Muscle	rectum
4	chr15:92396000-92399200	Active TSS	Brain Cingulate Gyrus	brain
5	chr15:92396000-92399200	Active TSS	Ovary	ovary
6	chr15:92396000-92399200	Active TSS	Right Ventricle	heart
7	chr15:92396000-92399400	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr15:92396000-92399400	Active TSS	Brain Substantia Nigra	brain
9	chr15:92396000-92399400	Active TSS	Right Atrium	heart
10	chr15:92396000-92399800	Active TSS	Brain Angular Gyrus	brain
11	chr15:92396000-92399800	Active TSS	Brain Anterior Caudate	brain
12	chr15:92396200-92400400	Active TSS	Fetal Brain Female	brain
13	chr15:92396400-92398600	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
14	chr15:92396400-92399200	Active TSS	Brain Hippocampus Middle	brain
15	chr15:92397200-92398600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
16	chr15:92397200-92398600	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr15:92397200-92398600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:92397200-92398800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr15:92397600-92398600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
20	chr15:92397600-92398600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
21	chr15:92397600-92398600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr15:92397600-92398800	Flanking Active TSS	Primary T cells from cord blood	blood
23	chr15:92397600-92398800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr15:92397600-92398800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
25	chr15:92397600-92399000	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
26	chr15:92397600-92399600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr15:92397600-92400200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr15:92397600-92401200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr15:92397800-92398600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
30	chr15:92397800-92398600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
31	chr15:92397800-92398600	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:92397800-92398600	Flanking Active TSS	Hela-S3	cervix
33	chr15:92397800-92398800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
34	chr15:92397800-92398800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:92397800-92398800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr15:92397800-92398800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:92397800-92398800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr15:92397800-92398800	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr15:92397800-92399400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:92397800-92399400	Flanking Active TSS	NHEK	skin
41	chr15:92397800-92399600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:92397800-92399800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:92398000-92398600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
44	chr15:92398000-92398600	Flanking Active TSS	A549	lung
45	chr15:92398000-92398600	Enhancers	Osteobl	bone
46	chr15:92398000-92398800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr15:92398000-92398800	Flanking Active TSS	HMEC	breast
48	chr15:92398000-92399200	Active TSS	Adipose Nuclei	Adipose
49	chr15:92398000-92399600	Weak transcription	Pancreas	Pancrea
50	chr15:92398000-92399800	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links