Variant report

Variant	rs28689009
Chromosome Location	chr16:72797922-72797923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13336787	0.80[AFR][1000 genomes]
rs13337986	0.85[AFR][1000 genomes]
rs28405979	0.85[AFR][1000 genomes]
rs28571692	0.85[AFR][1000 genomes]
rs28635002	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534039	chr16:72287171-72851170	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1063049	chr16:72577004-72887111	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv542952	chr16:72577004-72887111	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72783800-72810600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:72791400-72798200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr16:72793600-72802400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr16:72794800-72818000	Weak transcription	Aorta	Aorta
5	chr16:72795400-72802400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr16:72797600-72798000	Enhancers	Fetal Stomach	stomach
7	chr16:72797800-72798000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr16:72797800-72798000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr16:72797800-72798200	Flanking Active TSS	GM12878-XiMat	blood
10	chr16:72797800-72798400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr16:72797800-72798400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr16:72797800-72798600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr16:72797800-72798600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr16:72797800-72798600	Enhancers	Stomach Smooth Muscle	stomach
15	chr16:72797800-72798800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr16:72797800-72798800	Enhancers	Fetal Heart	heart
17	chr16:72797800-72799000	Enhancers	Fetal Lung	lung
18	chr16:72797800-72799400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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