Variant report

Variant	rs28691100
Chromosome Location	chr14:24399645-24399646
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24398247..24400471-chr14:24419661..24421717,2	MCF-7	breast:
2	chr14:24393890..24395903-chr14:24398328..24399829,2	MCF-7	breast:
3	chr14:24195357..24197443-chr14:24399348..24402008,2	MCF-7	breast:
4	chr14:24134252..24134887-chr14:24398848..24399689,2	MCF-7	breast:
5	chr14:24364444..24365228-chr14:24398939..24399664,2	MCF-7	breast:
6	chr14:24134707..24136516-chr14:24397576..24400257,2	MCF-7	breast:
7	chr14:24399117..24400644-chr14:24401569..24403780,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259334	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10135546	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28681271	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74036718	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74036720	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24395600-24401400	Weak transcription	Fetal Kidney	kidney
2	chr14:24397800-24400400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:24398400-24403000	Enhancers	Fetal Intestine Small	intestine
4	chr14:24398600-24400600	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr14:24398600-24400600	Enhancers	Ovary	ovary
6	chr14:24398600-24400800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr14:24398800-24400600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:24399000-24399800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:24399000-24400400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr14:24399000-24400800	Enhancers	Stomach Smooth Muscle	stomach
11	chr14:24399000-24401800	Enhancers	Liver	Liver
12	chr14:24399200-24399800	Enhancers	Colon Smooth Muscle	Colon
13	chr14:24399200-24400000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr14:24399200-24400000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr14:24399200-24400000	Enhancers	HepG2	liver
16	chr14:24399200-24400600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:24399200-24400600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:24399200-24400800	Enhancers	Fetal Stomach	stomach
19	chr14:24399200-24401000	Enhancers	K562	blood
20	chr14:24399200-24402200	Enhancers	Rectal Smooth Muscle	rectum
21	chr14:24399200-24403000	Enhancers	Fetal Intestine Large	intestine
22	chr14:24399200-24408800	Weak transcription	Lung	lung
23	chr14:24399400-24400200	Enhancers	Duodenum Mucosa	Duodenum
24	chr14:24399400-24401400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr14:24399400-24404800	Weak transcription	Pancreas	Pancrea
26	chr14:24399400-24408200	Weak transcription	Left Ventricle	heart
27	chr14:24399400-24410000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr14:24399400-24411000	Weak transcription	Brain Anterior Caudate	brain
29	chr14:24399600-24400000	Weak transcription	Stomach Mucosa	stomach
30	chr14:24399600-24400600	Enhancers	Adipose Nuclei	Adipose
31	chr14:24399600-24409000	Weak transcription	Brain Hippocampus Middle	brain
32	chr14:24399600-24409200	Weak transcription	Brain Germinal Matrix	brain

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