Variant report

Variant	rs74036720
Chromosome Location	chr14:24400531-24400532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24195357..24197443-chr14:24399348..24402008,2	MCF-7	breast:
2	chr14:24399117..24400644-chr14:24401569..24403780,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259334	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10135546	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28681271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28691100	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74036718	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24395600-24401400	Weak transcription	Fetal Kidney	kidney
2	chr14:24398400-24403000	Enhancers	Fetal Intestine Small	intestine
3	chr14:24398600-24400600	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr14:24398600-24400600	Enhancers	Ovary	ovary
5	chr14:24398600-24400800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr14:24398800-24400600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr14:24399000-24400800	Enhancers	Stomach Smooth Muscle	stomach
8	chr14:24399000-24401800	Enhancers	Liver	Liver
9	chr14:24399200-24400600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr14:24399200-24400600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:24399200-24400800	Enhancers	Fetal Stomach	stomach
12	chr14:24399200-24401000	Enhancers	K562	blood
13	chr14:24399200-24402200	Enhancers	Rectal Smooth Muscle	rectum
14	chr14:24399200-24403000	Enhancers	Fetal Intestine Large	intestine
15	chr14:24399200-24408800	Weak transcription	Lung	lung
16	chr14:24399400-24401400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr14:24399400-24404800	Weak transcription	Pancreas	Pancrea
18	chr14:24399400-24408200	Weak transcription	Left Ventricle	heart
19	chr14:24399400-24410000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:24399400-24411000	Weak transcription	Brain Anterior Caudate	brain
21	chr14:24399600-24400600	Enhancers	Adipose Nuclei	Adipose
22	chr14:24399600-24409000	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:24399600-24409200	Weak transcription	Brain Germinal Matrix	brain
24	chr14:24399800-24400600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr14:24399800-24400600	Enhancers	Osteobl	bone
26	chr14:24400000-24400600	Enhancers	Colon Smooth Muscle	Colon
27	chr14:24400000-24400800	Enhancers	Aorta	Aorta
28	chr14:24400000-24401200	Weak transcription	HepG2	liver
29	chr14:24400000-24401600	Enhancers	Stomach Mucosa	stomach
30	chr14:24400000-24408400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr14:24400000-24420000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr14:24400200-24401400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr14:24400400-24400800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr14:24400400-24402600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr14:24400400-24402600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:24400400-24402600	Weak transcription	Fetal Lung	lung
37	chr14:24400400-24411800	Weak transcription	HMEC	breast

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