Variant report

Variant	rs2869586
Chromosome Location	chr17:63224001-63224002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55847515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6504282	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73336263	0.90[EUR][1000 genomes]
rs7342953	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63220600-63224400	Weak transcription	Esophagus	oesophagus
2	chr17:63220600-63224400	Weak transcription	Right Atrium	heart
3	chr17:63221400-63224200	Weak transcription	Ovary	ovary
4	chr17:63221600-63228000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:63222400-63224800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr17:63222600-63224800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr17:63222800-63224400	Weak transcription	Fetal Lung	lung
8	chr17:63223400-63224600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr17:63223400-63225400	Enhancers	Spleen	Spleen
10	chr17:63223600-63224400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr17:63223600-63224400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr17:63223600-63225400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr17:63223800-63224400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr17:63223800-63225200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr17:63223800-63226200	Enhancers	Primary hematopoietic stem cells	blood
16	chr17:63224000-63224200	Enhancers	Lung	lung
17	chr17:63224000-63224400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
18	chr17:63224000-63225200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr17:63224000-63226400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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