Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63222163..63226262-chr17:63226769..63229619,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2869585	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2869586	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2869587	1.00[ASN][1000 genomes]
rs2904133	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs55847515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59400153	1.00[ASN][1000 genomes]
rs6504283	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6504284	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6504285	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73336263	0.90[EUR][1000 genomes]
rs7342953	0.90[EUR][1000 genomes]
rs73994767	1.00[ASN][1000 genomes]
rs73994770	1.00[ASN][1000 genomes]
rs73994771	1.00[ASN][1000 genomes]
rs8073544	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8073716	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8077510	1.00[ASN][1000 genomes]
rs8077956	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8078032	1.00[ASN][1000 genomes]
rs8078045	1.00[ASN][1000 genomes]
rs8078298	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8078885	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63176400-63223800	Weak transcription	Lung	lung
2	chr17:63217000-63223400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr17:63220600-63224400	Weak transcription	Esophagus	oesophagus
4	chr17:63220600-63224400	Weak transcription	Right Atrium	heart
5	chr17:63221400-63224200	Weak transcription	Ovary	ovary
6	chr17:63221600-63228000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr17:63222400-63222600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr17:63222400-63222600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr17:63222400-63222600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr17:63222400-63222600	Enhancers	Fetal Lung	lung
11	chr17:63222400-63224800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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