Variant report

Variant	rs28698022
Chromosome Location	chr3:162211524-162211525
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1015177	0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1031839	0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11924705	0.82[ASN][1000 genomes]
rs11925580	0.82[ASN][1000 genomes]
rs13064235	0.88[AFR][1000 genomes]
rs13068589	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13068863	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13091347	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1478148	0.83[AMR][1000 genomes]
rs1478149	0.83[AMR][1000 genomes]
rs1478150	0.83[AMR][1000 genomes]
rs1478151	0.83[AMR][1000 genomes]
rs2061736	0.83[AMR][1000 genomes]
rs2061737	0.83[AMR][1000 genomes]
rs2061738	0.83[AMR][1000 genomes]
rs2061739	0.83[AMR][1000 genomes]
rs2169726	0.80[AMR][1000 genomes]
rs34519160	0.82[ASN][1000 genomes]
rs35463187	0.82[ASN][1000 genomes]
rs35615498	0.80[AFR][1000 genomes]
rs36167213	0.82[ASN][1000 genomes]
rs3933789	0.83[AMR][1000 genomes]
rs4092575	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4856640	0.80[AFR][1000 genomes]
rs4856691	0.82[ASN][1000 genomes]
rs4856692	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4856693	0.82[ASN][1000 genomes]
rs62292862	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs62292863	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6441478	0.82[ASN][1000 genomes]
rs6441480	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6441500	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6441501	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6441508	0.90[AFR][1000 genomes]
rs6441510	0.83[AMR][1000 genomes]
rs6764631	0.80[AFR][1000 genomes]
rs6771669	0.82[ASN][1000 genomes]
rs6787328	0.82[ASN][1000 genomes]
rs6789378	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6796163	0.82[ASN][1000 genomes]
rs7375066	0.82[ASN][1000 genomes]
rs7431616	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7613585	0.83[AMR][1000 genomes]
rs7618873	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7621018	0.80[AFR][1000 genomes]
rs7630775	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7635791	0.83[AMR][1000 genomes]
rs7639668	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7639669	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7640405	0.82[ASN][1000 genomes]
rs7644526	0.86[AFR][1000 genomes]
rs7646771	0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9855439	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9868505	0.90[AFR][1000 genomes]
rs993390	0.83[AMR][1000 genomes]
rs993393	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877721	chr3:161878713-162303276	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1006802	chr3:161921063-162599175	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877725	chr3:162036879-162216666	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877728	chr3:162085820-162236885	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv877732	chr3:162113116-162236885	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv877735	chr3:162123179-162380954	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv592175	chr3:162130691-162226534	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv460931	chr3:162130691-162227870	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv592176	chr3:162130691-162227870	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv460932	chr3:162130691-162238239	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv592177	chr3:162130691-162238239	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv592178	chr3:162130691-162251934	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv877736	chr3:162131408-162227870	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv592182	chr3:162131408-162238239	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv877737	chr3:162132155-162242541	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv592189	chr3:162133075-162226117	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv877738	chr3:162138826-162236885	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv428424	chr3:162145988-163033943	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
19	nsv877739	chr3:162159287-162229584	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv877740	chr3:162159287-162236885	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv877741	chr3:162159287-162236885	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv877742	chr3:162159287-162239185	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv877743	chr3:162177290-162236885	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv1012160	chr3:162182166-162540478	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
25	esv2757020	chr3:162183462-162226821	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
26	esv2759196	chr3:162183462-162226821	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	nsv1000912	chr3:162186601-162311128	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv1012417	chr3:162186802-162216633	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
29	nsv592201	chr3:162188625-163142162	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
30	nsv877744	chr3:162198135-162236885	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
31	nsv877745	chr3:162198135-162237669	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
32	nsv877746	chr3:162203013-162236885	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
33	nsv877747	chr3:162203013-162237669	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
34	nsv877748	chr3:162208062-162236885	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
35	nsv877749	chr3:162208062-162238239	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
36	nsv877750	chr3:162208062-162239185	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
37	nsv877751	chr3:162208062-162239185	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
38	nsv877752	chr3:162208062-162242541	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
39	nsv10344	chr3:162210267-162235802	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162204800-162213000	Weak transcription	Dnd41	blood
2	chr3:162210000-162211600	Enhancers	HSMM	muscle
3	chr3:162210600-162212000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:162211200-162212000	Enhancers	Muscle Satellite Cultured Cells	--

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