Variant report

Variant	rs286982
Chromosome Location	chr12:42002600-42002601
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs185937	0.84[EUR][1000 genomes]
rs286976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286977	0.86[EUR][1000 genomes]
rs286981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286994	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs286995	0.84[EUR][1000 genomes]
rs286998	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs287034	0.84[EUR][1000 genomes]
rs287036	0.84[EUR][1000 genomes]
rs287038	0.84[EUR][1000 genomes]
rs287040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs287041	0.84[EUR][1000 genomes]
rs287045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs287046	0.84[EUR][1000 genomes]
rs287047	0.84[EUR][1000 genomes]
rs287049	0.84[EUR][1000 genomes]
rs287051	0.84[EUR][1000 genomes]
rs407628	0.84[EUR][1000 genomes]
rs426443	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42000200-42003800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:42000600-42012000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:42001400-42002600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr12:42001800-42002600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr12:42002400-42002600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:42002400-42002600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr12:42002600-42002800	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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