Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs185937	0.86[EUR][1000 genomes]
rs286976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs286977	0.84[EUR][1000 genomes]
rs286981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs286982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs286994	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286995	0.86[EUR][1000 genomes]
rs286998	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs287034	0.86[EUR][1000 genomes]
rs287035	0.81[EUR][1000 genomes]
rs287036	0.86[EUR][1000 genomes]
rs287038	0.86[EUR][1000 genomes]
rs287040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs287041	0.86[EUR][1000 genomes]
rs287046	0.86[EUR][1000 genomes]
rs287047	0.86[EUR][1000 genomes]
rs287049	0.86[EUR][1000 genomes]
rs287051	0.86[EUR][1000 genomes]
rs407628	0.86[EUR][1000 genomes]
rs426443	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899041	chr12:42005690-42072514	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42013200-42013600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:42013200-42013800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr12:42013200-42014600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr12:42013200-42014800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr12:42013200-42015200	Enhancers	Brain Germinal Matrix	brain
6	chr12:42013200-42015400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr12:42013200-42016400	Enhancers	Fetal Intestine Small	intestine

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