Variant report

Variant	rs28698699
Chromosome Location	chr3:17646369-17646370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17646023..17648164-chr3:17782827..17784866,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9812464	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17616000-17663600	Weak transcription	Left Ventricle	heart
2	chr3:17632400-17668200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:17633000-17667600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr3:17633600-17659600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr3:17633800-17676600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:17634200-17647600	Weak transcription	Right Ventricle	heart
7	chr3:17634200-17659800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr3:17639200-17676800	Weak transcription	Ovary	ovary
9	chr3:17639400-17651600	Weak transcription	Gastric	stomach
10	chr3:17641000-17659800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:17641400-17647600	Weak transcription	Pancreas	Pancrea
12	chr3:17641400-17659800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr3:17641400-17660200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:17641400-17663000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:17643800-17646400	Weak transcription	A549	lung
16	chr3:17643800-17659800	Weak transcription	Primary B cells from cord blood	blood
17	chr3:17644000-17646400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:17644000-17646800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:17646000-17647200	Enhancers	NHEK	skin
20	chr3:17646000-17647400	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr3:17646200-17646400	ZNF genes & repeats	Fetal Intestine Small	intestine
22	chr3:17646200-17646600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:17646200-17646600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:17646200-17647000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:17646200-17647000	Enhancers	HUVEC	blood vessel
26	chr3:17646200-17647200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr3:17646200-17647200	Enhancers	HMEC	breast
28	chr3:17646200-17647200	Enhancers	NH-A	brain
29	chr3:17646200-17647400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:17646200-17647600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:17646200-17647800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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