Variant report

Variant	rs28698781
Chromosome Location	chr17:63086247-63086248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12451996	0.83[ASN][1000 genomes]
rs12453179	0.92[ASN][1000 genomes]
rs4791237	0.97[ASN][1000 genomes]
rs61250994	0.98[ASN][1000 genomes]
rs6504275	0.92[ASN][1000 genomes]
rs8076603	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066765	chr17:62649313-63124303	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv575872	chr17:63084995-63111452	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63082200-63088400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr17:63082200-63096400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr17:63082400-63087200	Weak transcription	Right Atrium	heart
4	chr17:63082800-63095400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr17:63082800-63095400	Weak transcription	Small Intestine	intestine
6	chr17:63083800-63087000	Enhancers	Placenta	Placenta
7	chr17:63084800-63088600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr17:63085000-63087400	Weak transcription	Stomach Mucosa	stomach
9	chr17:63085200-63088200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr17:63085200-63088400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr17:63085200-63088600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr17:63085600-63087200	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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