Variant report

Variant	rs4791237
Chromosome Location	chr17:63083850-63083851
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63070811..63072725-chr17:63082554..63084215,2	MCF-7	breast:
2	chr17:63078642..63080403-chr17:63080916..63084692,3	MCF-7	breast:
3	chr17:63076479..63078721-chr17:63081517..63084623,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10514869	0.80[CHB][hapmap]
rs12451996	0.84[ASN][1000 genomes]
rs12453179	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28674819	0.80[ASN][1000 genomes]
rs28698781	0.97[ASN][1000 genomes]
rs61250994	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6504275	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8076603	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9915375	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066765	chr17:62649313-63124303	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63081600-63084800	Enhancers	Fetal Intestine Small	intestine
2	chr17:63081600-63085200	Enhancers	Duodenum Mucosa	Duodenum
3	chr17:63081600-63085200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr17:63082000-63084000	Weak transcription	A549	lung
5	chr17:63082000-63084600	Enhancers	Fetal Intestine Large	intestine
6	chr17:63082000-63084800	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr17:63082200-63088400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr17:63082200-63096400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr17:63082400-63084000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr17:63082400-63087200	Weak transcription	Right Atrium	heart
11	chr17:63082600-63084000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr17:63082800-63085000	Weak transcription	Adipose Nuclei	Adipose
13	chr17:63082800-63095400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr17:63082800-63095400	Weak transcription	Small Intestine	intestine
15	chr17:63083800-63084000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr17:63083800-63084000	Enhancers	Stomach Mucosa	stomach
17	chr17:63083800-63084200	Enhancers	Liver	Liver
18	chr17:63083800-63084200	Enhancers	Pancreas	Pancrea
19	chr17:63083800-63084400	Enhancers	HepG2	liver
20	chr17:63083800-63084600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr17:63083800-63086000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr17:63083800-63086000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr17:63083800-63086000	Enhancers	NHEK	skin
24	chr17:63083800-63086200	Enhancers	HMEC	breast
25	chr17:63083800-63087000	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links