Variant report

Variant	rs28703921
Chromosome Location	chr8:124889185-124889186
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10089499	0.81[ASN][1000 genomes]
rs10089757	0.82[ASN][1000 genomes]
rs10110548	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10956153	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10956154	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10956155	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10956156	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11779980	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11782845	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11787464	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12541526	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12548182	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12548510	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12550262	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28425543	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28829655	0.82[AMR][1000 genomes]
rs61030560	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7844410	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9656949	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6374	chr8:124854157-124899409	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124887800-124892200	Enhancers	NHDF-Ad	bronchial
2	chr8:124888200-124893800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:124888400-124889400	Weak transcription	NHLF	lung
4	chr8:124888800-124891600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:124889000-124889800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:124889000-124890000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:124889000-124890400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:124889000-124890400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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