Variant report

Variant	rs28829655
Chromosome Location	chr8:124878042-124878043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10110548	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10956153	0.80[AMR][1000 genomes]
rs11787464	0.81[AMR][1000 genomes]
rs12541526	0.89[AMR][1000 genomes]
rs12550262	0.80[AMR][1000 genomes]
rs28703921	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv6374	chr8:124854157-124899409	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124877800-124878200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr8:124877800-124878200	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr8:124877800-124878200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr8:124877800-124878200	Active TSS	Esophagus	oesophagus
5	chr8:124877800-124878600	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr8:124877800-124878800	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr8:124878000-124878400	Active TSS	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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