The 2.0 version of rSNPBase

Variant report

Variant rs28705985
Chromosome Location chr2:54106645-54106646
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54087000-54168000 Strong transcription Monocytes-CD14+_RO01746 blood
2 chr2:54087200-54176000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
3 chr2:54087400-54112200 Weak transcription Psoas Muscle Psoas
4 chr2:54087400-54112600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr2:54087400-54117400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr2:54087400-54137600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr2:54087600-54110800 Weak transcription ES-WA7 Cell Line embryonic stem cell
8 chr2:54087600-54113600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr2:54087600-54116600 Weak transcription Pancreas Pancrea
10 chr2:54087600-54117000 Weak transcription Placenta Amnion Placenta Amnion
11 chr2:54087600-54187600 Weak transcription Stomach Mucosa stomach
12 chr2:54087800-54112200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr2:54088000-54113800 Weak transcription Pancreatic Islets Pancreatic Islet
14 chr2:54088400-54137200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr2:54088600-54138000 Strong transcription Primary B cells from peripheral blood blood
16 chr2:54089800-54136000 Strong transcription Primary hematopoietic stem cells short term culture blood
17 chr2:54090200-54107400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr2:54090200-54137800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr2:54090200-54138200 Strong transcription HUES64 Cell Line embryonic stem cell
20 chr2:54090400-54137600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr2:54090800-54137400 Strong transcription Primary T cells fromperipheralblood blood
22 chr2:54091000-54137000 Strong transcription Fetal Thymus thymus
23 chr2:54091000-54137800 Strong transcription iPS-20b Cell Line embryonic stem cell
24 chr2:54091000-54138000 Strong transcription HUES48 Cell Line embryonic stem cell
25 chr2:54091200-54138000 Strong transcription Primary T helper cells fromperipheralblood blood
26 chr2:54091400-54137600 Strong transcription Liver Liver
27 chr2:54093800-54124000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr2:54094000-54110600 Weak transcription Colon Smooth Muscle Colon
29 chr2:54094000-54137800 Strong transcription Breast Myoepithelial Primary Cells Breast
30 chr2:54094600-54110400 Weak transcription Esophagus oesophagus
31 chr2:54094800-54113200 Weak transcription Spleen Spleen
32 chr2:54095400-54111800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
33 chr2:54095600-54109400 Weak transcription NHLF lung
34 chr2:54098400-54107800 Weak transcription Right Atrium heart
35 chr2:54099200-54137400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr2:54100400-54137800 Strong transcription HUES6 Cell Line embryonic stem cell
37 chr2:54100400-54137800 Strong transcription Rectal Mucosa Donor 29 rectum
38 chr2:54100400-54140200 Strong transcription Primary T regulatory cells fromperipheralblood blood
39 chr2:54100600-54123000 Strong transcription Primary hematopoietic stem cells blood
40 chr2:54100600-54137400 Strong transcription Placenta Placenta
41 chr2:54100600-54137800 Strong transcription Primary B cells from cord blood blood
42 chr2:54100600-54141200 Strong transcription Primary monocytes fromperipheralblood blood
43 chr2:54100800-54107600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
44 chr2:54100800-54107800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr2:54100800-54138000 Strong transcription Fetal Muscle Trunk muscle
46 chr2:54101000-54108000 Strong transcription Primary neutrophils fromperipheralblood blood
47 chr2:54101400-54110800 Weak transcription Primary T killer memory cells from peripheral blood blood
48 chr2:54101800-54108800 Weak transcription Fetal Brain Male brain
49 chr2:54101800-54110600 Weak transcription Fetal Heart heart
50 chr2:54102000-54110400 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015