Variant report

Variant	rs28711082
Chromosome Location	chr15:59828682-59828683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58984798	1.00[AMR][1000 genomes]
rs71480540	1.00[AMR][1000 genomes]
rs7176657	1.00[AMR][1000 genomes]
rs73418943	1.00[AMR][1000 genomes]
rs73418949	1.00[AMR][1000 genomes]
rs73418953	1.00[AMR][1000 genomes]
rs73418969	1.00[AMR][1000 genomes]
rs74017765	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv904279	chr15:59791666-59842927	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59823000-59828800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr15:59825800-59832200	Weak transcription	A549	lung
3	chr15:59827400-59831000	Enhancers	Primary B cells from peripheral blood	blood
4	chr15:59827800-59829600	Weak transcription	Stomach Mucosa	stomach
5	chr15:59827800-59831200	Enhancers	GM12878-XiMat	blood
6	chr15:59827800-59835600	Weak transcription	Colonic Mucosa	Colon
7	chr15:59828000-59829400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr15:59828200-59832400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr15:59828200-59832600	Weak transcription	Fetal Intestine Small	intestine
10	chr15:59828600-59828800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr15:59828600-59829600	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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