Variant report

Variant	rs71480540
Chromosome Location	chr15:59913728-59913729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28711082	1.00[AMR][1000 genomes]
rs58984798	1.00[AMR][1000 genomes]
rs7176657	1.00[AMR][1000 genomes]
rs73418943	1.00[AMR][1000 genomes]
rs73418949	1.00[AMR][1000 genomes]
rs73418953	1.00[AMR][1000 genomes]
rs73418969	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1044442	chr15:59765724-59955587	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv542403	chr15:59765724-59955587	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv569605	chr15:59855226-59956553	Strong transcription Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59905200-59931600	Weak transcription	Fetal Stomach	stomach
2	chr15:59905200-59946200	Weak transcription	Gastric	stomach
3	chr15:59908800-59914400	Weak transcription	Hela-S3	cervix
4	chr15:59909000-59914600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:59909000-59930200	Weak transcription	Fetal Intestine Large	intestine
6	chr15:59911400-59929800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr15:59912000-59913800	Strong transcription	Duodenum Mucosa	Duodenum
8	chr15:59912000-59914000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:59912000-59914000	Weak transcription	HepG2	liver
10	chr15:59912000-59914400	Weak transcription	Stomach Mucosa	stomach
11	chr15:59912000-59915400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:59912000-59932600	Weak transcription	Colonic Mucosa	Colon
13	chr15:59912200-59928400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:59912200-59935000	Weak transcription	Fetal Intestine Small	intestine
15	chr15:59912400-59914400	Strong transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links