Variant report
Variant | rs28711373 |
---|---|
Chromosome Location | chr14:34889992-34889993 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:14)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:14 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | KAP1 | chr14:34889504-34890290 | K562 | blood: | n/a | n/a |
2 | SPI1 | chr14:34889922-34890123 | GM12878 | blood: | n/a | n/a |
3 | SETDB1 | chr14:34889601-34890244 | U2OS | brain: | n/a | n/a |
4 | ZNF143 | chr14:34889816-34890109 | Hela-S3 | cervix: | n/a | n/a |
5 | CBX3 | chr14:34889782-34890149 | K562 | blood: | n/a | n/a |
6 | MAX | chr14:34889779-34890367 | NB4 | blood: | n/a | n/a |
7 | CBX3 | chr14:34889789-34890064 | K562 | blood: | n/a | n/a |
8 | SPI1 | chr14:34889912-34890117 | K562 | blood: | n/a | n/a |
9 | SPI1 | chr14:34889860-34890204 | HL-60 | blood: | n/a | n/a |
10 | ZNF143 | chr14:34889832-34890101 | K562 | blood: | n/a | n/a |
11 | MYC | chr14:34889794-34890322 | NB4 | blood: | n/a | n/a |
12 | TRIM28 | chr14:34889740-34890142 | K562 | blood: | n/a | n/a |
13 | SETDB1 | chr14:34889757-34890222 | K562 | blood: | n/a | n/a |
14 | TRIM28 | chr14:34889888-34890109 | K562 | blood: | n/a | n/a |
No data |
(count:2 , 50 per page) page:
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No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000223593 | TF binding region |
ENSG00000165389 | Chromatin interaction |
ENSG00000129521 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10129553 | 0.91[EUR][1000 genomes] |
rs10129766 | 0.91[EUR][1000 genomes] |
rs10130622 | 0.91[EUR][1000 genomes] |
rs10130753 | 0.91[EUR][1000 genomes] |
rs10134725 | 0.91[EUR][1000 genomes] |
rs10136474 | 0.91[EUR][1000 genomes] |
rs10146788 | 0.91[EUR][1000 genomes] |
rs10147869 | 0.91[EUR][1000 genomes] |
rs11156844 | 0.88[EUR][1000 genomes] |
rs11156845 | 0.88[EUR][1000 genomes] |
rs17102535 | 0.89[EUR][1000 genomes] |
rs2383595 | 0.83[EUR][1000 genomes] |
rs28464896 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28503702 | 0.88[EUR][1000 genomes] |
rs28505950 | 0.88[EUR][1000 genomes] |
rs28570067 | 0.91[EUR][1000 genomes] |
rs28716315 | 0.91[EUR][1000 genomes] |
rs28825399 | 0.91[EUR][1000 genomes] |
rs61552888 | 0.88[EUR][1000 genomes] |
rs7140844 | 0.97[EUR][1000 genomes] |
rs7148816 | 0.88[EUR][1000 genomes] |
rs7152442 | 0.86[EUR][1000 genomes] |
rs7152899 | 0.88[EUR][1000 genomes] |
rs8005278 | 0.94[EUR][1000 genomes] |
rs8006226 | 0.91[EUR][1000 genomes] |
rs8009289 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1040980 | chr14:34345018-35255592 | Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 109 gene(s) | inside rSNPs | diseases |
2 | nsv1051104 | chr14:34592378-35007083 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
3 | nsv949738 | chr14:34616331-34990688 | Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
4 | nsv564192 | chr14:34725233-34996507 | Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
5 | nsv564193 | chr14:34728127-35000188 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
6 | nsv528989 | chr14:34744426-34998705 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
7 | nsv1054949 | chr14:34834260-34992049 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
8 | nsv542025 | chr14:34834260-34992049 | Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
9 | nsv1050218 | chr14:34851521-34969433 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
10 | nsv1048369 | chr14:34886956-34974774 | Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:34889400-34890600 | ZNF genes & repeats | Monocytes-CD14+_RO01746 | blood |
2 | chr14:34889600-34890800 | ZNF genes & repeats | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |