Variant report

Variant	rs8005278
Chromosome Location	chr14:34913581-34913582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:34909006..34911649-chr14:34913275..34915517,2	MCF-7	breast:
2	chr14:34906840..34909474-chr14:34911416..34913752,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10129553	0.97[EUR][1000 genomes]
rs10129766	0.97[EUR][1000 genomes]
rs10130622	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10130753	0.97[EUR][1000 genomes]
rs10134725	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10136474	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10143373	0.84[AMR][1000 genomes]
rs10145547	0.86[EUR][1000 genomes]
rs10146788	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10147869	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11156844	0.94[EUR][1000 genomes]
rs11156845	0.94[EUR][1000 genomes]
rs17102535	0.94[EUR][1000 genomes]
rs28464896	0.94[EUR][1000 genomes]
rs28503702	0.94[EUR][1000 genomes]
rs28505950	0.94[EUR][1000 genomes]
rs28570067	0.97[EUR][1000 genomes]
rs28711373	0.94[EUR][1000 genomes]
rs28716315	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28825399	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61552888	0.94[EUR][1000 genomes]
rs7140844	0.91[EUR][1000 genomes]
rs7148816	0.88[EUR][1000 genomes]
rs7152442	0.91[EUR][1000 genomes]
rs7152899	0.88[EUR][1000 genomes]
rs7158740	0.83[EUR][1000 genomes]
rs8006226	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8009289	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1051104	chr14:34592378-35007083	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv949738	chr14:34616331-34990688	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv564192	chr14:34725233-34996507	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv564193	chr14:34728127-35000188	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv528989	chr14:34744426-34998705	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1054949	chr14:34834260-34992049	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv542025	chr14:34834260-34992049	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv1050218	chr14:34851521-34969433	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
10	nsv1048369	chr14:34886956-34974774	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
11	nsv901600	chr14:34895977-35010041	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:34894200-34914000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:34895800-34915400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:34896400-34922400	Weak transcription	Left Ventricle	heart
4	chr14:34899200-34916600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr14:34900000-34913600	Weak transcription	Fetal Stomach	stomach
6	chr14:34900800-34919000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:34901600-34913800	Weak transcription	NHEK	skin
8	chr14:34901800-34915800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:34901800-34916600	Weak transcription	Fetal Heart	heart
10	chr14:34901800-34929400	Weak transcription	K562	blood
11	chr14:34903200-34919200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:34904600-34924800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:34904800-34913600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr14:34904800-34915800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:34904800-34923400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr14:34905000-34917600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr14:34905400-34917400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:34906000-34922400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr14:34906600-34919800	Weak transcription	HSMM	muscle
20	chr14:34906800-34917400	Weak transcription	HMEC	breast
21	chr14:34906800-34918800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:34906800-34922400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr14:34906800-34923400	Weak transcription	NHLF	lung
24	chr14:34906800-34928800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:34906800-34928800	Weak transcription	NH-A	brain
26	chr14:34906800-34930200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr14:34907000-34916400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr14:34907000-34916600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr14:34907000-34918400	Weak transcription	Hela-S3	cervix
30	chr14:34907000-34919200	Weak transcription	NHDF-Ad	bronchial
31	chr14:34907000-34919800	Weak transcription	HUVEC	blood vessel
32	chr14:34907000-34923600	Weak transcription	Liver	Liver
33	chr14:34907200-34915200	Weak transcription	Osteobl	bone
34	chr14:34907200-34919400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr14:34907200-34919800	Weak transcription	Gastric	stomach
36	chr14:34907200-34922000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr14:34907200-34930000	Weak transcription	Primary B cells from cord blood	blood
38	chr14:34907400-34915000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr14:34907400-34915800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr14:34907400-34916600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr14:34907400-34916800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr14:34907400-34919400	Weak transcription	Fetal Intestine Large	intestine
43	chr14:34907400-34922400	Weak transcription	Ovary	ovary
44	chr14:34907400-34929800	Weak transcription	Psoas Muscle	Psoas
45	chr14:34907400-34930000	Weak transcription	Small Intestine	intestine
46	chr14:34908000-34923400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr14:34908400-34915200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr14:34909200-34913600	Weak transcription	A549	lung
49	chr14:34909600-34917600	Weak transcription	Fetal Muscle Leg	muscle
50	chr14:34910000-34921200	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links