Variant report

Variant	rs28714420
Chromosome Location	chr18:7935323-7935324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10164001	0.88[AFR][1000 genomes]
rs13381990	0.90[AFR][1000 genomes]
rs1443601	0.86[EUR][1000 genomes]
rs28429357	0.92[AFR][1000 genomes]
rs60950392	0.86[EUR][1000 genomes]
rs7230073	0.88[AFR][1000 genomes]
rs7239466	0.88[AFR][1000 genomes]
rs73381829	1.00[EUR][1000 genomes]
rs73381838	1.00[EUR][1000 genomes]
rs73381856	0.86[EUR][1000 genomes]
rs73381865	0.86[EUR][1000 genomes]
rs73381875	0.86[EUR][1000 genomes]
rs73381880	0.86[EUR][1000 genomes]
rs8092268	1.00[EUR][1000 genomes]
rs9949799	0.86[EUR][1000 genomes]
rs9954126	0.87[AFR][1000 genomes]
rs9962120	0.80[AFR][1000 genomes]
rs9964734	1.00[EUR][1000 genomes]
rs9972988	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1062911	chr18:7561991-8088274	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv543637	chr18:7561991-8088274	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1064345	chr18:7562051-8088274	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv543638	chr18:7562051-8088274	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2761987	chr18:7934001-7943335	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:7922400-7940600	Weak transcription	Gastric	stomach
2	chr18:7923000-7936200	Weak transcription	Thymus	Thymus
3	chr18:7923400-7937400	Weak transcription	Right Ventricle	heart
4	chr18:7923400-7945800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr18:7923600-7937000	Weak transcription	Adipose Nuclei	Adipose
6	chr18:7923800-7936800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr18:7924400-7940400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr18:7925000-7936200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr18:7925800-7940400	Weak transcription	Fetal Muscle Leg	muscle
10	chr18:7926000-7936600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr18:7926200-7936200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr18:7926400-7940200	Weak transcription	Brain Germinal Matrix	brain
13	chr18:7926400-7945200	Weak transcription	Ovary	ovary
14	chr18:7926800-7936600	Weak transcription	Fetal Stomach	stomach
15	chr18:7926800-7945600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr18:7926800-7945800	Weak transcription	Fetal Lung	lung
17	chr18:7927400-7936400	Weak transcription	Aorta	Aorta
18	chr18:7927400-7939800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr18:7927400-7940200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr18:7927800-7936000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr18:7927800-7937400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr18:7927800-7946600	Weak transcription	Fetal Kidney	kidney
23	chr18:7928000-7946600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr18:7928200-7937400	Weak transcription	Left Ventricle	heart
25	chr18:7929400-7935800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr18:7929600-7937000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr18:7932000-7946000	Weak transcription	Brain Anterior Caudate	brain
28	chr18:7932200-7936200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr18:7932200-7961000	Weak transcription	HepG2	liver
30	chr18:7933400-7940400	Weak transcription	Lung	lung
31	chr18:7933600-7945400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr18:7933800-7936200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr18:7933800-7936400	Weak transcription	A549	lung
34	chr18:7933800-7940000	Weak transcription	Right Atrium	heart
35	chr18:7934200-7941000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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