Variant report

Variant	rs73381865
Chromosome Location	chr18:7954205-7954206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:7953033..7955520-chr18:7955662..7957889,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1443601	1.00[EUR][1000 genomes]
rs28714420	0.86[EUR][1000 genomes]
rs60950392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7230992	0.83[AFR][1000 genomes]
rs7237788	0.88[AFR][1000 genomes]
rs73381829	0.86[EUR][1000 genomes]
rs73381838	0.86[EUR][1000 genomes]
rs73381850	0.83[AFR][1000 genomes]
rs73381854	0.94[AFR][1000 genomes]
rs73381856	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73381859	0.83[AFR][1000 genomes]
rs73381860	0.83[AFR][1000 genomes]
rs73381869	1.00[AFR][1000 genomes]
rs73381871	0.88[AFR][1000 genomes]
rs73381875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73381878	0.88[AFR][1000 genomes]
rs73381880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8092268	0.86[EUR][1000 genomes]
rs9949799	1.00[EUR][1000 genomes]
rs9964734	0.86[EUR][1000 genomes]
rs9972988	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1062911	chr18:7561991-8088274	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv543637	chr18:7561991-8088274	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1064345	chr18:7562051-8088274	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv543638	chr18:7562051-8088274	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:7932200-7961000	Weak transcription	HepG2	liver
2	chr18:7937600-7955200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr18:7941400-7955000	Weak transcription	Psoas Muscle	Psoas
4	chr18:7941800-7966400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr18:7942000-7955200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr18:7942000-7955200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr18:7942200-7955200	Weak transcription	Fetal Muscle Leg	muscle
8	chr18:7946200-7958200	Weak transcription	Aorta	Aorta
9	chr18:7946800-7955000	Weak transcription	Fetal Lung	lung
10	chr18:7947200-7955600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr18:7947200-7955800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr18:7947200-7958200	Weak transcription	Colon Smooth Muscle	Colon
13	chr18:7947200-7981400	Weak transcription	Fetal Stomach	stomach
14	chr18:7947400-7955400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr18:7947400-7958200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr18:7947400-7958400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr18:7947400-7959200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr18:7947400-7963400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr18:7947400-7963600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr18:7947400-7965600	Weak transcription	Thymus	Thymus
21	chr18:7947600-7955400	Weak transcription	Brain Angular Gyrus	brain
22	chr18:7947600-7956600	Weak transcription	Brain Hippocampus Middle	brain
23	chr18:7947600-7958200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr18:7947800-7955200	Weak transcription	Right Atrium	heart
25	chr18:7947800-7955200	Weak transcription	Right Ventricle	heart
26	chr18:7947800-7957000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr18:7947800-7957400	Weak transcription	Spleen	Spleen
28	chr18:7947800-7958400	Weak transcription	Brain Anterior Caudate	brain
29	chr18:7947800-7958400	Weak transcription	Gastric	stomach
30	chr18:7947800-7958600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr18:7947800-7967600	Weak transcription	Primary T cells from cord blood	blood
32	chr18:7948000-7955200	Weak transcription	Ovary	ovary
33	chr18:7948000-7955400	Weak transcription	Fetal Thymus	thymus
34	chr18:7948000-7956600	Weak transcription	Lung	lung
35	chr18:7948000-7957000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr18:7948000-7959600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr18:7948000-7965800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr18:7948000-7967200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr18:7948000-7975000	Weak transcription	Pancreas	Pancrea
40	chr18:7950800-7956200	Weak transcription	Fetal Intestine Small	intestine
41	chr18:7951000-7958600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr18:7951200-7955000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr18:7951200-7955200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr18:7951200-7958000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr18:7951200-7958200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr18:7951200-7963400	Weak transcription	Adipose Nuclei	Adipose
47	chr18:7951400-7956600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr18:7951600-7958400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr18:7951600-7965800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr18:7952200-7954600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links