Variant report

Variant	rs73381871
Chromosome Location	chr18:7957052-7957053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:7953033..7955520-chr18:7955662..7957889,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs16952771	1.00[EUR][1000 genomes]
rs16952773	1.00[EUR][1000 genomes]
rs16952774	1.00[EUR][1000 genomes]
rs16952776	1.00[EUR][1000 genomes]
rs16952793	1.00[EUR][1000 genomes]
rs16952797	1.00[EUR][1000 genomes]
rs16952804	1.00[EUR][1000 genomes]
rs16952810	1.00[EUR][1000 genomes]
rs16952842	1.00[EUR][1000 genomes]
rs16952843	1.00[EUR][1000 genomes]
rs16952866	1.00[EUR][1000 genomes]
rs16952871	1.00[EUR][1000 genomes]
rs4306631	1.00[EUR][1000 genomes]
rs4356582	1.00[EUR][1000 genomes]
rs4633832	1.00[EUR][1000 genomes]
rs57135719	1.00[EUR][1000 genomes]
rs58929719	1.00[EUR][1000 genomes]
rs60102079	1.00[EUR][1000 genomes]
rs60767363	1.00[EUR][1000 genomes]
rs60825749	1.00[EUR][1000 genomes]
rs60950392	0.88[AFR][1000 genomes]
rs7230272	1.00[EUR][1000 genomes]
rs7230992	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7237788	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7245244	1.00[EUR][1000 genomes]
rs73379949	1.00[EUR][1000 genomes]
rs73381850	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73381854	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73381856	0.83[AFR][1000 genomes]
rs73381859	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73381860	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73381865	0.88[AFR][1000 genomes]
rs73381869	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73381875	0.88[AFR][1000 genomes]
rs73381878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73381880	0.88[AFR][1000 genomes]
rs73381887	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385609	1.00[EUR][1000 genomes]
rs73385613	1.00[EUR][1000 genomes]
rs73385621	1.00[EUR][1000 genomes]
rs73385641	1.00[EUR][1000 genomes]
rs73385646	1.00[EUR][1000 genomes]
rs73385652	1.00[EUR][1000 genomes]
rs73385656	1.00[EUR][1000 genomes]
rs73385657	1.00[EUR][1000 genomes]
rs73385662	1.00[EUR][1000 genomes]
rs73385668	1.00[EUR][1000 genomes]
rs73385669	1.00[EUR][1000 genomes]
rs73385681	1.00[EUR][1000 genomes]
rs73385701	1.00[EUR][1000 genomes]
rs73387708	1.00[EUR][1000 genomes]
rs73387757	1.00[EUR][1000 genomes]
rs8083556	1.00[EUR][1000 genomes]
rs8097080	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1062911	chr18:7561991-8088274	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv543637	chr18:7561991-8088274	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1064345	chr18:7562051-8088274	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv543638	chr18:7562051-8088274	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:7932200-7961000	Weak transcription	HepG2	liver
2	chr18:7941800-7966400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr18:7946200-7958200	Weak transcription	Aorta	Aorta
4	chr18:7947200-7958200	Weak transcription	Colon Smooth Muscle	Colon
5	chr18:7947200-7981400	Weak transcription	Fetal Stomach	stomach
6	chr18:7947400-7958200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr18:7947400-7958400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr18:7947400-7959200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr18:7947400-7963400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr18:7947400-7963600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr18:7947400-7965600	Weak transcription	Thymus	Thymus
12	chr18:7947600-7958200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr18:7947800-7957400	Weak transcription	Spleen	Spleen
14	chr18:7947800-7958400	Weak transcription	Brain Anterior Caudate	brain
15	chr18:7947800-7958400	Weak transcription	Gastric	stomach
16	chr18:7947800-7958600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr18:7947800-7967600	Weak transcription	Primary T cells from cord blood	blood
18	chr18:7948000-7959600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr18:7948000-7965800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr18:7948000-7967200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr18:7948000-7975000	Weak transcription	Pancreas	Pancrea
22	chr18:7951000-7958600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr18:7951200-7958000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr18:7951200-7958200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr18:7951200-7963400	Weak transcription	Adipose Nuclei	Adipose
26	chr18:7951600-7958400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr18:7951600-7965800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr18:7953600-7958800	Weak transcription	Fetal Heart	heart
29	chr18:7953800-7958400	Enhancers	Hela-S3	cervix
30	chr18:7954200-7957400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr18:7954200-7957400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr18:7954200-7957400	Weak transcription	GM12878-XiMat	blood
33	chr18:7954400-7958200	Weak transcription	NHDF-Ad	bronchial
34	chr18:7954400-7966000	Weak transcription	Fetal Kidney	kidney
35	chr18:7955000-7957800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr18:7955000-7958200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr18:7955000-7958200	Weak transcription	Osteobl	bone
38	chr18:7955000-7958400	Weak transcription	NH-A	brain
39	chr18:7955200-7958200	Weak transcription	HUVEC	blood vessel
40	chr18:7955200-7958200	Weak transcription	NHLF	lung
41	chr18:7955400-7958200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr18:7955400-7958400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr18:7955400-7965200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr18:7955600-7957400	Weak transcription	Left Ventricle	heart
45	chr18:7955600-7957400	Weak transcription	Right Atrium	heart
46	chr18:7955600-7958200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr18:7955600-7958400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr18:7955600-7962000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr18:7955600-7962400	Weak transcription	Psoas Muscle	Psoas
50	chr18:7955600-7963400	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links