Variant report

Variant	rs60825749
Chromosome Location	chr18:7903465-7903466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs16952771	1.00[EUR][1000 genomes]
rs16952773	1.00[EUR][1000 genomes]
rs16952774	1.00[EUR][1000 genomes]
rs16952776	1.00[EUR][1000 genomes]
rs16952793	1.00[EUR][1000 genomes]
rs16952797	1.00[EUR][1000 genomes]
rs16952804	1.00[EUR][1000 genomes]
rs16952810	1.00[EUR][1000 genomes]
rs16952842	1.00[EUR][1000 genomes]
rs16952843	1.00[EUR][1000 genomes]
rs16952866	1.00[EUR][1000 genomes]
rs16952871	1.00[EUR][1000 genomes]
rs4306631	1.00[EUR][1000 genomes]
rs4356582	1.00[EUR][1000 genomes]
rs4633832	1.00[EUR][1000 genomes]
rs57135719	1.00[EUR][1000 genomes]
rs57369000	1.00[AMR][1000 genomes]
rs58929719	1.00[EUR][1000 genomes]
rs60102079	1.00[EUR][1000 genomes]
rs602338	1.00[AMR][1000 genomes]
rs60767363	1.00[EUR][1000 genomes]
rs61612177	1.00[AMR][1000 genomes]
rs7230272	1.00[EUR][1000 genomes]
rs7230992	1.00[EUR][1000 genomes]
rs7235284	1.00[AMR][1000 genomes]
rs7237788	1.00[EUR][1000 genomes]
rs7245244	1.00[EUR][1000 genomes]
rs73379914	1.00[AMR][1000 genomes]
rs73379922	1.00[AMR][1000 genomes]
rs73379949	1.00[EUR][1000 genomes]
rs73381850	1.00[EUR][1000 genomes]
rs73381854	1.00[EUR][1000 genomes]
rs73381859	1.00[EUR][1000 genomes]
rs73381860	1.00[EUR][1000 genomes]
rs73381869	1.00[EUR][1000 genomes]
rs73381871	1.00[EUR][1000 genomes]
rs73381878	1.00[EUR][1000 genomes]
rs73381887	1.00[EUR][1000 genomes]
rs73385609	1.00[EUR][1000 genomes]
rs73385613	1.00[EUR][1000 genomes]
rs73385621	1.00[EUR][1000 genomes]
rs73385641	1.00[EUR][1000 genomes]
rs73385646	1.00[EUR][1000 genomes]
rs73385652	1.00[EUR][1000 genomes]
rs73385656	1.00[EUR][1000 genomes]
rs73385657	1.00[EUR][1000 genomes]
rs73385662	1.00[EUR][1000 genomes]
rs73385668	1.00[EUR][1000 genomes]
rs73385669	1.00[EUR][1000 genomes]
rs73385681	1.00[EUR][1000 genomes]
rs73385701	1.00[EUR][1000 genomes]
rs73387708	1.00[EUR][1000 genomes]
rs73387757	1.00[EUR][1000 genomes]
rs8083556	1.00[EUR][1000 genomes]
rs8097080	1.00[EUR][1000 genomes]
rs895386	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv458016	chr18:7488133-7934001	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv576399	chr18:7488133-7934001	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2762810	chr18:7492090-7924728	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1062911	chr18:7561991-8088274	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv543637	chr18:7561991-8088274	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1064345	chr18:7562051-8088274	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv543638	chr18:7562051-8088274	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:7857800-7907200	Weak transcription	Thymus	Thymus
2	chr18:7886800-7914200	Weak transcription	HepG2	liver
3	chr18:7890000-7905600	Weak transcription	Fetal Thymus	thymus
4	chr18:7890000-7907200	Weak transcription	Lung	lung
5	chr18:7897000-7905400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr18:7897400-7913200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr18:7898000-7915200	Weak transcription	Fetal Heart	heart
8	chr18:7898600-7904200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr18:7898600-7907600	Weak transcription	Aorta	Aorta
10	chr18:7898800-7904200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr18:7898800-7904400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr18:7899000-7908600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr18:7899000-7916200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr18:7901400-7906200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr18:7901600-7903600	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr18:7901600-7903600	Enhancers	Psoas Muscle	Psoas
17	chr18:7901600-7904600	Enhancers	NHLF	lung
18	chr18:7901600-7905200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr18:7902200-7904000	Enhancers	Colon Smooth Muscle	Colon
20	chr18:7902600-7904200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr18:7902600-7904200	Weak transcription	Hela-S3	cervix
22	chr18:7902600-7904200	Weak transcription	Osteobl	bone
23	chr18:7902600-7909000	Weak transcription	Pancreas	Pancrea
24	chr18:7902800-7904600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr18:7903000-7903600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr18:7903200-7904200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr18:7903400-7904200	Enhancers	A549	lung
28	chr18:7903400-7904200	Weak transcription	NH-A	brain
29	chr18:7903400-7905000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr18:7903400-7905600	Weak transcription	Left Ventricle	heart
31	chr18:7903400-7905600	Weak transcription	Right Ventricle	heart
32	chr18:7903400-7908000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr18:7903400-7909000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr18:7903400-7910200	Weak transcription	Ovary	ovary
35	chr18:7903400-7914800	Weak transcription	Adipose Nuclei	Adipose
36	chr18:7903400-7915200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr18:7903400-7922200	Weak transcription	Right Atrium	heart
38	chr18:7903400-7922200	Weak transcription	Stomach Smooth Muscle	stomach

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