Variant report

Variant	rs602338
Chromosome Location	chr18:7821695-7821696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57369000	1.00[AMR][1000 genomes]
rs60825749	1.00[AMR][1000 genomes]
rs61612177	1.00[AMR][1000 genomes]
rs73379914	1.00[AMR][1000 genomes]
rs73379922	1.00[AMR][1000 genomes]
rs895386	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv458016	chr18:7488133-7934001	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv576399	chr18:7488133-7934001	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2762810	chr18:7492090-7924728	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1062911	chr18:7561991-8088274	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv543637	chr18:7561991-8088274	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1064345	chr18:7562051-8088274	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv543638	chr18:7562051-8088274	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv576425	chr18:7747873-7859757	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1062454	chr18:7784432-7838015	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:7810200-7822400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr18:7810200-7824200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:7813200-7822600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr18:7815400-7821800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr18:7815400-7822600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr18:7815400-7843800	Weak transcription	A549	lung
7	chr18:7815600-7822600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr18:7815600-7824800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr18:7815600-7826400	Weak transcription	HepG2	liver
10	chr18:7816000-7822600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr18:7816400-7822400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr18:7817200-7822800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr18:7818000-7821800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr18:7818200-7822400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr18:7818200-7822400	Weak transcription	Fetal Lung	lung
16	chr18:7818200-7822800	Weak transcription	Ovary	ovary
17	chr18:7818200-7839400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr18:7818400-7822600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr18:7818800-7821800	Weak transcription	Thymus	Thymus
20	chr18:7820000-7822600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr18:7820000-7826200	Enhancers	Right Ventricle	heart
22	chr18:7820200-7822400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr18:7820600-7822000	Enhancers	Left Ventricle	heart
24	chr18:7820600-7822000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr18:7820600-7822400	Enhancers	Adipose Nuclei	Adipose
26	chr18:7820600-7822600	Enhancers	Fetal Thymus	thymus
27	chr18:7820600-7825000	Enhancers	Psoas Muscle	Psoas
28	chr18:7820800-7823000	Weak transcription	Fetal Stomach	stomach
29	chr18:7820800-7824000	Weak transcription	Pancreas	Pancrea
30	chr18:7821000-7822400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr18:7821000-7822800	Weak transcription	Lung	lung
32	chr18:7821000-7823000	Weak transcription	Spleen	Spleen
33	chr18:7821000-7824000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr18:7821200-7821800	Enhancers	Fetal Muscle Leg	muscle
35	chr18:7821200-7822200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr18:7821200-7822400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr18:7821200-7822800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr18:7821200-7823400	Enhancers	Colon Smooth Muscle	Colon
39	chr18:7821400-7821800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr18:7821400-7822400	Enhancers	Fetal Heart	heart
41	chr18:7821400-7822600	Weak transcription	Right Atrium	heart
42	chr18:7821600-7825200	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links