Variant report

Variant	rs28722895
Chromosome Location	chr18:29533809-29533810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1811331	0.89[ASN][1000 genomes]
rs2042745	0.95[ASN][1000 genomes]
rs28480597	0.93[ASN][1000 genomes]
rs66750305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67301372	0.95[ASN][1000 genomes]
rs67481100	0.96[ASN][1000 genomes]
rs67734253	0.96[ASN][1000 genomes]
rs73411592	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9952484	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067252	chr18:29475073-29583744	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1065285	chr18:29527884-29614986	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29525600-29537400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr18:29530800-29534400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr18:29530800-29534600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr18:29531000-29534400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr18:29531200-29534200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr18:29531400-29534200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr18:29531400-29536800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr18:29532000-29534400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr18:29532400-29534400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr18:29533400-29534000	Enhancers	K562	blood
11	chr18:29533400-29534800	Enhancers	Small Intestine	intestine
12	chr18:29533600-29534800	Enhancers	Hela-S3	cervix
13	chr18:29533600-29534800	Enhancers	HepG2	liver
14	chr18:29533600-29535200	Enhancers	Fetal Intestine Small	intestine
15	chr18:29533800-29534400	Enhancers	Fetal Intestine Large	intestine
16	chr18:29533800-29534800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr18:29533800-29535000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr18:29533800-29535200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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