Variant report

Variant	rs9952484
Chromosome Location	chr18:29545204-29545205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1811331	0.86[ASN][1000 genomes]
rs2042745	0.92[ASN][1000 genomes]
rs28480597	0.89[ASN][1000 genomes]
rs28722895	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs66750305	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs67301372	0.91[ASN][1000 genomes]
rs67481100	0.93[ASN][1000 genomes]
rs67734253	0.93[ASN][1000 genomes]
rs73411592	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067252	chr18:29475073-29583744	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1065285	chr18:29527884-29614986	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29544200-29552000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:29544800-29547000	Enhancers	Fetal Intestine Large	intestine
3	chr18:29545000-29545800	Enhancers	Stomach Mucosa	stomach
4	chr18:29545200-29546000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr18:29545200-29547200	Enhancers	Duodenum Mucosa	Duodenum
6	chr18:29545200-29547400	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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