Variant report

Variant	rs28723570
Chromosome Location	chr2:56610891-56610892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13389257	1.00[EUR][1000 genomes]
rs13396099	1.00[EUR][1000 genomes]
rs13398499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13424203	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13426375	1.00[EUR][1000 genomes]
rs13427586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13428678	1.00[EUR][1000 genomes]
rs17047868	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28530709	1.00[EUR][1000 genomes]
rs4287805	1.00[EUR][1000 genomes]
rs56274428	1.00[EUR][1000 genomes]
rs57138748	1.00[EUR][1000 genomes]
rs6736677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355401	1.00[EUR][1000 genomes]
rs73940673	1.00[EUR][1000 genomes]
rs73940701	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940702	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7576776	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv522944	chr2:56603985-56676997	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1806915	chr2:56607397-56633217	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56576000-56613200	Weak transcription	Left Ventricle	heart
2	chr2:56606600-56611200	Weak transcription	HSMM	muscle
3	chr2:56608400-56611400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:56608400-56612200	Weak transcription	Adipose Nuclei	Adipose
5	chr2:56608600-56611200	Enhancers	Fetal Intestine Small	intestine
6	chr2:56608800-56611200	Enhancers	Fetal Intestine Large	intestine
7	chr2:56610400-56611200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:56610600-56611600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:56610600-56612600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:56610800-56611600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr2:56610800-56614000	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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