Variant report

Variant	rs7355401
Chromosome Location	chr2:56518271-56518272
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13389257	1.00[EUR][1000 genomes]
rs13396099	1.00[EUR][1000 genomes]
rs13398499	1.00[EUR][1000 genomes]
rs13424203	1.00[EUR][1000 genomes]
rs13426375	1.00[EUR][1000 genomes]
rs13427586	1.00[EUR][1000 genomes]
rs13428678	1.00[EUR][1000 genomes]
rs17047868	1.00[EUR][1000 genomes]
rs28530709	1.00[EUR][1000 genomes]
rs28723570	1.00[EUR][1000 genomes]
rs4287805	1.00[EUR][1000 genomes]
rs4672107	0.81[AFR][1000 genomes]
rs56274428	1.00[EUR][1000 genomes]
rs57138748	1.00[EUR][1000 genomes]
rs6736677	1.00[EUR][1000 genomes]
rs7355411	0.92[AFR][1000 genomes]
rs73940673	1.00[EUR][1000 genomes]
rs73940701	1.00[EUR][1000 genomes]
rs73940702	1.00[EUR][1000 genomes]
rs7576776	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56515600-56526600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:56516400-56523400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:56516400-56525800	Weak transcription	HSMM	muscle
4	chr2:56516800-56524800	Weak transcription	Psoas Muscle	Psoas
5	chr2:56517200-56524800	Weak transcription	Left Ventricle	heart
6	chr2:56517400-56520000	Weak transcription	Adipose Nuclei	Adipose
7	chr2:56518200-56518600	Enhancers	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links