Variant report

Variant	rs28726238
Chromosome Location	chr3:43212316-43212317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1392318	1.00[EUR][1000 genomes]
rs4286406	1.00[EUR][1000 genomes]
rs59565527	1.00[EUR][1000 genomes]
rs72860739	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv3784	chr3:43176397-43221254	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43205000-43218400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:43210200-43213200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:43210400-43212400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:43211200-43218400	Weak transcription	Right Ventricle	heart
5	chr3:43212000-43213800	Enhancers	Hela-S3	cervix
6	chr3:43212200-43212600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:43212200-43214200	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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