Variant report

Variant	rs4286406
Chromosome Location	chr3:43219669-43219670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1392318	1.00[EUR][1000 genomes]
rs28726238	1.00[EUR][1000 genomes]
rs59565527	1.00[EUR][1000 genomes]
rs72860739	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv3784	chr3:43176397-43221254	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43213800-43220000	Weak transcription	Hela-S3	cervix
2	chr3:43214000-43230800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:43214200-43220000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:43215800-43220200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:43217400-43220000	Weak transcription	Pancreas	Pancrea
6	chr3:43217400-43225000	Enhancers	Fetal Intestine Small	intestine
7	chr3:43217800-43220800	Weak transcription	Thymus	Thymus
8	chr3:43218000-43221600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:43218000-43224000	Enhancers	HUVEC	blood vessel
10	chr3:43218200-43224800	Enhancers	Spleen	Spleen
11	chr3:43218200-43225600	Enhancers	Stomach Mucosa	stomach
12	chr3:43218200-43228600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr3:43218400-43220200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:43218400-43221600	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr3:43218400-43224200	Enhancers	Liver	Liver
16	chr3:43218400-43225400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr3:43218600-43220000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr3:43218600-43220200	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr3:43218600-43221600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:43218800-43219800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:43218800-43220000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr3:43218800-43220000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:43218800-43220000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr3:43218800-43220000	Weak transcription	Esophagus	oesophagus
25	chr3:43218800-43220200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:43218800-43220400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:43218800-43220400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:43218800-43221000	Weak transcription	Fetal Stomach	stomach
29	chr3:43218800-43222400	Weak transcription	Fetal Lung	lung
30	chr3:43218800-43224200	Enhancers	Fetal Intestine Large	intestine
31	chr3:43219000-43220000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:43219000-43220000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:43219000-43220000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr3:43219000-43220000	Weak transcription	Lung	lung
35	chr3:43219000-43220000	Weak transcription	HMEC	breast
36	chr3:43219000-43220200	Weak transcription	Primary T cells from cord blood	blood
37	chr3:43219000-43220200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:43219000-43220200	Weak transcription	Right Ventricle	heart
39	chr3:43219000-43220600	Weak transcription	Adipose Nuclei	Adipose
40	chr3:43219000-43220600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr3:43219000-43222200	Weak transcription	Gastric	stomach
42	chr3:43219200-43220400	Weak transcription	Primary hematopoietic stem cells	blood
43	chr3:43219200-43220600	Weak transcription	Left Ventricle	heart
44	chr3:43219200-43221400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr3:43219200-43222200	Weak transcription	Right Atrium	heart
46	chr3:43219400-43219800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr3:43219400-43219800	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr3:43219400-43219800	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr3:43219400-43219800	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr3:43219400-43219800	Weak transcription	Fetal Muscle Trunk	muscle

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