Variant report

Variant	rs287311
Chromosome Location	chr13:69171464-69171465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs287335	0.86[AFR][1000 genomes]
rs287408	1.00[YRI][hapmap]
rs287411	1.00[YRI][hapmap]
rs378178	0.86[AFR][1000 genomes]
rs420039	1.00[AMR][1000 genomes]
rs470314	1.00[AMR][1000 genomes]
rs470648	1.00[AMR][1000 genomes]
rs531551	1.00[AMR][1000 genomes]
rs60703759	1.00[AMR][1000 genomes]
rs680496	1.00[AMR][1000 genomes]
rs74092518	1.00[AMR][1000 genomes]
rs74092525	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042249	chr13:68960954-69175674	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv528660	chr13:68981659-69205918	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1047573	chr13:68983862-69177639	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv541827	chr13:68983862-69177639	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1040959	chr13:69003437-69199511	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1048225	chr13:69003437-69200522	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1050299	chr13:69159723-69201233	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69170600-69172600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:69171400-69171800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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