Variant report

Variant	rs2873258
Chromosome Location	chr3:157144986-157144987
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10936090	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1840680	0.81[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2120243	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2305619	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2316706	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2316708	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2316709	0.82[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2316710	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7609926	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7615621	0.82[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7616177	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7648322	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9289982	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9681270	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9868133	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157136200-157145800	Weak transcription	NHLF	lung
2	chr3:157136200-157146800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:157139000-157154600	Weak transcription	Lung	lung
4	chr3:157141400-157154200	Weak transcription	NH-A	brain
5	chr3:157141600-157145400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:157141800-157146000	Weak transcription	NHDF-Ad	bronchial
7	chr3:157141800-157146200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:157141800-157146600	Weak transcription	HUVEC	blood vessel
9	chr3:157141800-157146800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:157141800-157147000	Weak transcription	HSMM	muscle
11	chr3:157142800-157145400	Weak transcription	Fetal Brain Female	brain
12	chr3:157142800-157145800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:157142800-157146400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:157142800-157154200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr3:157143400-157145400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:157143600-157146400	Strong transcription	Osteobl	bone
17	chr3:157143800-157154000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:157144200-157154000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:157144800-157145400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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