Variant report

Variant	rs2316706
Chromosome Location	chr3:157160061-157160062
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10936090	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1840680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2120243	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2305619	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2316708	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2316709	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2316710	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2873258	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3816527	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4680364	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4680367	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6803043	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6803236	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7609926	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7615621	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7616177	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634847	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7648322	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289982	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9681270	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9868133	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157154600-157160800	Transcr. at gene 5' and 3'	Osteobl	bone
2	chr3:157154600-157161000	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:157155200-157160800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:157155200-157163400	Weak transcription	Hela-S3	cervix
5	chr3:157156200-157160200	Weak transcription	Spleen	Spleen
6	chr3:157156400-157160200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:157156400-157160200	Weak transcription	K562	blood
8	chr3:157156400-157160400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:157156400-157160400	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:157156400-157162600	Weak transcription	Gastric	stomach
11	chr3:157156600-157160200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:157156600-157160400	Weak transcription	Pancreas	Pancrea
13	chr3:157156600-157160600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:157156800-157160200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:157156800-157160200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:157156800-157160400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:157156800-157161800	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:157157000-157160200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:157157000-157161800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:157157200-157160600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:157157200-157163400	Weak transcription	Brain Germinal Matrix	brain
22	chr3:157157400-157160200	Weak transcription	Fetal Stomach	stomach
23	chr3:157157400-157160800	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:157157400-157162400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:157157600-157160200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr3:157157600-157160200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr3:157157800-157160200	Weak transcription	Fetal Lung	lung
28	chr3:157157800-157162000	Weak transcription	HSMMtube	muscle
29	chr3:157158200-157160600	Transcr. at gene 5' and 3'	NHLF	lung
30	chr3:157158200-157161600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:157158200-157164000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr3:157158400-157161000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
33	chr3:157158600-157161200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
34	chr3:157159000-157177400	Weak transcription	NH-A	brain
35	chr3:157159200-157160400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:157159200-157160800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:157159200-157161200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:157159200-157163200	Weak transcription	Fetal Brain Female	brain
39	chr3:157159400-157160200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr3:157159400-157162000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:157159600-157160800	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
42	chr3:157159800-157160200	Weak transcription	HSMM	muscle
43	chr3:157159800-157161200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
44	chr3:157159800-157162200	Genic enhancers	HUVEC	blood vessel
45	chr3:157160000-157161000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:157160000-157161200	Strong transcription	Monocytes-CD14+_RO01746	blood

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