Variant report

Variant	rs4680364
Chromosome Location	chr3:157150639-157150640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1840680	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2305619	0.82[AMR][1000 genomes]
rs2316706	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2316708	0.89[AMR][1000 genomes]
rs2316709	0.89[AMR][1000 genomes]
rs2316710	0.89[AMR][1000 genomes]
rs3816527	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680367	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6803043	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6803236	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7609926	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7615621	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7616177	0.89[AMR][1000 genomes]
rs7626884	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7634847	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9868133	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157139000-157154600	Weak transcription	Lung	lung
2	chr3:157141400-157154200	Weak transcription	NH-A	brain
3	chr3:157142800-157154200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:157143800-157154000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:157144200-157154000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:157145400-157154600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:157145800-157154200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:157147800-157153200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr3:157147800-157154200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:157148200-157153600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:157148200-157154200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:157148200-157154200	Weak transcription	Fetal Brain Female	brain
13	chr3:157148400-157153200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:157148400-157153400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr3:157148600-157153600	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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