Variant report

Variant	rs7626884
Chromosome Location	chr3:157144149-157144150
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1027603	0.81[JPT][hapmap]
rs10936086	0.83[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10936087	0.83[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10936090	0.86[AMR][1000 genomes]
rs12486427	0.83[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs12492874	0.80[ASN][1000 genomes]
rs12496879	0.82[JPT][hapmap]
rs12638732	0.83[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs13087207	0.80[ASN][1000 genomes]
rs1456097	0.83[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs1456105	0.82[ASN][1000 genomes]
rs1456106	0.82[ASN][1000 genomes]
rs1500920	0.81[JPT][hapmap]
rs1546261	0.81[JPT][hapmap]
rs1568609	0.81[JPT][hapmap]
rs1585080	0.83[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1840668	0.83[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs1840680	0.95[YRI][hapmap]
rs2085315	0.80[ASN][1000 genomes]
rs2120243	0.87[AMR][1000 genomes]
rs35004310	0.80[ASN][1000 genomes]
rs3816527	1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3816528	0.82[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4640512	0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4680360	0.90[JPT][hapmap]
rs4680364	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680367	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441126	0.90[JPT][hapmap]
rs6441128	0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6441129	0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs6803043	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6803236	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6803628	0.90[JPT][hapmap];0.81[AMR][1000 genomes]
rs722484	0.80[ASN][1000 genomes]
rs7615621	0.91[YRI][hapmap]
rs7617727	0.82[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs7631556	0.82[JPT][hapmap]
rs7634847	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7639254	0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7648322	0.86[AMR][1000 genomes]
rs9289982	0.87[AMR][1000 genomes]
rs9681270	0.87[AMR][1000 genomes]
rs9857875	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs9871290	0.82[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs988587	0.81[JPT][hapmap]
rs988588	0.81[JPT][hapmap]
rs9990136	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157136200-157145800	Weak transcription	NHLF	lung
2	chr3:157136200-157146800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:157139000-157154600	Weak transcription	Lung	lung
4	chr3:157141400-157154200	Weak transcription	NH-A	brain
5	chr3:157141600-157145400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:157141800-157146000	Weak transcription	NHDF-Ad	bronchial
7	chr3:157141800-157146200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:157141800-157146600	Weak transcription	HUVEC	blood vessel
9	chr3:157141800-157146800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:157141800-157147000	Weak transcription	HSMM	muscle
11	chr3:157142600-157144200	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:157142800-157145400	Weak transcription	Fetal Brain Female	brain
13	chr3:157142800-157145800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:157142800-157146400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:157142800-157154200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr3:157143400-157144800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:157143400-157145400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:157143600-157146400	Strong transcription	Osteobl	bone
19	chr3:157143800-157154000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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