Variant report

Variant	rs7631556
Chromosome Location	chr3:157039791-157039792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156951228..156953656-chr3:157037881..157040326,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1027603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936085	0.94[CHB][hapmap]
rs10936086	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs10936087	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs12486304	0.84[CEU][hapmap]
rs12486427	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs12496879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12629552	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12638732	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs1403107	0.84[CEU][hapmap]
rs1456097	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs1456108	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs1500916	0.94[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs1500919	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1500920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1500927	0.84[CEU][hapmap]
rs1545596	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1546261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1563420	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs1568609	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1568612	0.96[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1585080	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs1824058	0.92[JPT][hapmap]
rs1840668	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs1840673	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs1869859	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1965246	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs2047649	0.94[CHB][hapmap];0.92[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2088815	0.91[CEU][hapmap];0.88[CHB][hapmap]
rs2124497	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs2168430	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs2168431	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs2305620	0.91[JPT][hapmap]
rs3816527	0.82[JPT][hapmap]
rs3816528	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs4640512	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs4679793	0.91[JPT][hapmap]
rs4680351	0.95[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4680358	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4680359	0.94[CHB][hapmap]
rs4680360	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs4680367	0.81[JPT][hapmap]
rs6441121	0.89[CHB][hapmap]
rs6441124	0.86[ASN][1000 genomes]
rs6441126	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs6441128	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs6441129	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs6776647	0.95[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6780399	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6801110	0.94[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs6803628	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs7614339	0.95[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7617727	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs7623173	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs7626884	0.82[JPT][hapmap]
rs7636413	0.83[CEU][hapmap]
rs7639254	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs7643340	0.84[CEU][hapmap]
rs885094	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs924517	0.89[CHB][hapmap]
rs9857875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9867618	0.89[CHB][hapmap]
rs9871290	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs9878474	0.91[JPT][hapmap]
rs9883103	0.84[CHB][hapmap]
rs9883822	0.81[ASN][1000 genomes]
rs988587	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs988588	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9990136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157030600-157047000	Weak transcription	Osteobl	bone
3	chr3:157036000-157047800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:157036200-157040400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:157036800-157053000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:157039200-157039800	Enhancers	HUVEC	blood vessel

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