Variant report

Variant	rs12486304
Chromosome Location	chr3:156989960-156989961
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156987878..156990782-chr3:156994349..156996892,2	MCF-7	breast:
2	chr3:156988336..156991271-chr3:156994407..156996753,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1027603	0.83[CEU][hapmap]
rs10755111	0.81[AMR][1000 genomes]
rs10804777	0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10936076	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12496879	0.84[CEU][hapmap]
rs12634905	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12637932	0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1403105	0.82[AMR][1000 genomes]
rs1403107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1500927	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546261	0.83[CEU][hapmap]
rs1568612	0.88[CEU][hapmap]
rs2047647	0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2062607	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2088815	0.92[CEU][hapmap]
rs2321743	0.82[AMR][1000 genomes]
rs4679790	0.81[AMR][1000 genomes]
rs4679791	0.82[AMR][1000 genomes]
rs4680351	0.88[CEU][hapmap]
rs4680353	0.81[AMR][1000 genomes]
rs55734537	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6776647	0.88[CEU][hapmap]
rs7614339	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs7631556	0.84[CEU][hapmap]
rs7636413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7643340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs872652	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:156967200-157000000	Weak transcription	NH-A	brain
3	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:156979600-156997000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:156981200-156991400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:156981600-156991000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:156982400-156992800	Weak transcription	Osteobl	bone
8	chr3:156982400-156997000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:156984200-156998200	Weak transcription	HUVEC	blood vessel
10	chr3:156988000-157005800	Weak transcription	Pancreas	Pancrea
11	chr3:156988600-156991200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:156989400-156999800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:156989600-156991800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:156989800-156991000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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