Variant report

Variant	rs2062607
Chromosome Location	chr3:157005697-157005698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156999731..157001800-chr3:157004485..157007413,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10804777	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10936076	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12486304	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12634905	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12637932	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1403107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1500927	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1568612	0.81[EUR][1000 genomes]
rs2047647	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4680351	0.82[EUR][1000 genomes]
rs55734537	0.81[AMR][1000 genomes]
rs7636413	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7643340	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs872652	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:156988000-157005800	Weak transcription	Pancreas	Pancrea
3	chr3:156998800-157006000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:157000600-157015400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:157001600-157008200	Weak transcription	NH-A	brain
6	chr3:157003600-157007400	Weak transcription	Fetal Stomach	stomach
7	chr3:157003600-157011800	Weak transcription	Fetal Lung	lung
8	chr3:157003800-157007600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:157004000-157007000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:157004200-157007400	Weak transcription	NHLF	lung
11	chr3:157004400-157007000	Weak transcription	Osteobl	bone
12	chr3:157004400-157007200	Weak transcription	NHDF-Ad	bronchial
13	chr3:157004400-157007600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:157004600-157005800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:157004600-157008000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
17	chr3:157005000-157008200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:157005600-157006000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr3:157005600-157006200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:157005600-157010400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:157005600-157015000	Enhancers	Muscle Satellite Cultured Cells	--

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