Variant report

Variant	rs872652
Chromosome Location	chr3:157001604-157001605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156997473..157000192-chr3:157001265..157003413,2	K562	blood:
2	chr3:156999731..157001800-chr3:157004485..157007413,2	MCF-7	breast:
3	chr3:157001018..157003742-chr3:157209899..157211507,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10755111	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10804777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10936076	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10936077	0.81[AMR][1000 genomes]
rs1157738	0.86[CHB][hapmap]
rs12486304	0.85[AMR][1000 genomes]
rs12490120	0.82[CEU][hapmap];0.80[AMR][1000 genomes]
rs12634905	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12637932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403104	0.91[CHB][hapmap]
rs1403105	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1403107	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1403109	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs1500927	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1546260	0.82[CEU][hapmap];0.80[AMR][1000 genomes]
rs16827308	0.87[CHB][hapmap]
rs16827322	0.82[CHB][hapmap]
rs2047647	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2062607	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2321743	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4679790	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4679791	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4680347	0.82[CHB][hapmap]
rs4680353	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73156724	0.81[AMR][1000 genomes]
rs7636413	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7643340	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:156988000-157005800	Weak transcription	Pancreas	Pancrea
3	chr3:156997000-157004400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:156997600-157003600	Weak transcription	K562	blood
5	chr3:156998400-157001800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:156998800-157002000	Enhancers	NHLF	lung
7	chr3:156998800-157006000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:156999600-157003800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:157000600-157001800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr3:157000600-157003000	Weak transcription	Fetal Stomach	stomach
11	chr3:157000600-157004000	Enhancers	NHDF-Ad	bronchial
12	chr3:157000600-157015400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:157000800-157004000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:157001200-157003000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:157001400-157003200	Enhancers	HUVEC	blood vessel
16	chr3:157001600-157001800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:157001600-157001800	Flanking Active TSS	Osteobl	bone
18	chr3:157001600-157002000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:157001600-157004000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:157001600-157008200	Weak transcription	NH-A	brain

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