Variant report

Variant	rs7643340
Chromosome Location	chr3:157009939-157009940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157005885..157009539-chr3:157009923..157012607,4	K562	blood:
2	chr3:157008081..157011337-chr3:157013720..157016384,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1027603	0.83[CEU][hapmap]
rs10804777	0.82[AMR][1000 genomes]
rs10936076	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12486304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12496879	0.84[CEU][hapmap]
rs12634905	0.82[AMR][1000 genomes]
rs12637932	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1403107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500927	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1546261	0.83[CEU][hapmap];0.81[YRI][hapmap]
rs1568612	0.88[CEU][hapmap];0.83[YRI][hapmap]
rs2047647	0.82[AMR][1000 genomes]
rs2062607	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2088815	0.92[CEU][hapmap];0.88[YRI][hapmap]
rs4680351	0.88[CEU][hapmap];0.85[YRI][hapmap]
rs55734537	0.81[AMR][1000 genomes]
rs6776647	0.88[CEU][hapmap]
rs7614339	0.86[CEU][hapmap];0.81[YRI][hapmap]
rs7631556	0.84[CEU][hapmap]
rs7636413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs872652	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157000600-157015400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157003600-157011800	Weak transcription	Fetal Lung	lung
3	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
4	chr3:157005600-157010400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:157005600-157015000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:157006000-157011800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:157007000-157010400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:157007200-157010200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:157007400-157010200	Enhancers	NHLF	lung
10	chr3:157007600-157010200	Enhancers	HSMM	muscle
11	chr3:157007600-157012200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:157008400-157010400	Enhancers	NHDF-Ad	bronchial
13	chr3:157009000-157012200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:157009000-157012400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:157009200-157012000	Weak transcription	HSMMtube	muscle
16	chr3:157009200-157012200	Weak transcription	NH-A	brain
17	chr3:157009400-157011200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:157009600-157010800	Weak transcription	Osteobl	bone
19	chr3:157009600-157011000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:157009600-157011000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:157009800-157010000	Enhancers	H9 Cell Line	embryonic stem cell
22	chr3:157009800-157010200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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