Variant report

Variant	rs1027603
Chromosome Location	chr3:157051016-157051017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10936085	0.94[CHB][hapmap]
rs10936086	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs10936087	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs12486304	0.83[CEU][hapmap]
rs12486427	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs12496879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12629552	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12638732	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs1403107	0.83[CEU][hapmap]
rs1456097	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs1456108	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1500916	0.94[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.86[TSI][hapmap];0.88[ASN][1000 genomes]
rs1500919	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1500920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1500927	0.83[CEU][hapmap]
rs1545596	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1546261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1563420	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1568609	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.98[ASN][1000 genomes]
rs1568612	0.95[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1585080	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs1824058	0.91[JPT][hapmap]
rs1840668	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs1840673	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs1869859	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1965246	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2047649	0.94[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2088815	0.91[CEU][hapmap];0.88[CHB][hapmap];0.98[TSI][hapmap]
rs2124497	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs2168430	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2168431	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs2305620	0.91[JPT][hapmap]
rs3816527	0.81[JPT][hapmap]
rs3816528	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs4640512	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs4679793	0.91[JPT][hapmap]
rs4680351	0.96[CEU][hapmap];0.94[CHB][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.81[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4680358	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4680359	0.94[CHB][hapmap]
rs4680360	0.82[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap]
rs4680367	0.81[JPT][hapmap]
rs6441121	0.89[CHB][hapmap]
rs6441124	0.86[ASN][1000 genomes]
rs6441126	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6441128	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs6441129	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs6776647	0.96[CEU][hapmap];0.94[CHB][hapmap];0.89[GIH][hapmap];0.83[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6780399	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6801110	0.94[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs6803628	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs7614339	0.94[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7617727	0.88[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap]
rs7623173	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs7626884	0.81[JPT][hapmap]
rs7631556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636413	0.83[CEU][hapmap];0.93[TSI][hapmap]
rs7639254	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs7643340	0.83[CEU][hapmap]
rs885094	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs924517	0.89[CHB][hapmap]
rs9857875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9867618	0.89[CHB][hapmap]
rs9871290	0.88[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap]
rs9878474	0.91[JPT][hapmap]
rs9883103	0.84[CHB][hapmap]
rs9883822	0.81[ASN][1000 genomes]
rs988587	0.92[ASW][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.86[TSI][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs988588	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9990136	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.94[MKK][hapmap];0.86[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1027603	SSR3	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157036800-157053000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:157041000-157065600	Weak transcription	Pancreas	Pancrea
3	chr3:157047800-157051200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:157048000-157054600	Enhancers	NHDF-Ad	bronchial
5	chr3:157048200-157057000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:157049400-157051800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:157049600-157051800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:157049800-157051600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:157050000-157051600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:157050400-157054800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:157050600-157054600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:157051000-157052200	Enhancers	NH-A	brain
13	chr3:157051000-157053600	Enhancers	Osteobl	bone
14	chr3:157051000-157054000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:157051000-157054200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:157051000-157054800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:157051000-157054800	Enhancers	NHLF	lung
18	chr3:157051000-157056200	Enhancers	HUVEC	blood vessel

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