Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1027603	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12496879	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12629552	0.88[ASN][1000 genomes]
rs1500916	0.86[ASN][1000 genomes]
rs1500919	0.96[ASN][1000 genomes]
rs1500920	0.96[ASN][1000 genomes]
rs1546261	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568609	0.96[ASN][1000 genomes]
rs1568612	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2047649	0.88[ASN][1000 genomes]
rs2088810	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4680351	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4680358	0.96[ASN][1000 genomes]
rs6441124	0.84[ASN][1000 genomes]
rs6771109	0.81[EUR][1000 genomes]
rs6776647	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6780399	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801110	0.88[ASN][1000 genomes]
rs7614339	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7631556	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9857875	0.96[ASN][1000 genomes]
rs988587	0.96[ASN][1000 genomes]
rs988588	0.96[ASN][1000 genomes]
rs9990136	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
2	chr3:157011200-157017800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:157013000-157017400	Weak transcription	HSMMtube	muscle
4	chr3:157013000-157018600	Weak transcription	K562	blood
5	chr3:157013000-157032600	Weak transcription	NH-A	brain
6	chr3:157013200-157017400	Weak transcription	HSMM	muscle
7	chr3:157013200-157017400	Weak transcription	NHLF	lung
8	chr3:157013200-157019600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:157014400-157018800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:157014400-157019200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:157015000-157017400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:157015400-157019600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:157016400-157017400	Weak transcription	NHDF-Ad	bronchial
15	chr3:157016400-157017400	Weak transcription	Osteobl	bone
16	chr3:157016400-157017600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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