Variant report

Variant	rs6771109
Chromosome Location	chr3:156922813-156922814
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156916616..156918556-chr3:156921435..156923956,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1027603	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs10936085	0.87[CHB][hapmap]
rs12486304	0.87[CEU][hapmap]
rs12496879	0.95[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap]
rs12629549	0.83[ASN][1000 genomes]
rs1403107	0.87[CEU][hapmap]
rs1500916	0.93[CHB][hapmap]
rs1500920	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs1500927	0.87[CEU][hapmap]
rs1546261	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs1568609	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1568612	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2047649	0.87[CHB][hapmap]
rs2088810	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2088814	0.82[ASN][1000 genomes]
rs2088815	0.95[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs2133952	0.82[ASN][1000 genomes]
rs4563363	0.81[ASN][1000 genomes]
rs4680351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4680359	0.93[CHB][hapmap]
rs4680360	0.86[CHB][hapmap]
rs6441117	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6441121	0.93[CHB][hapmap];0.81[ASN][1000 genomes]
rs6765828	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6776647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6780399	0.81[AMR][1000 genomes]
rs6801110	0.87[CHB][hapmap]
rs7614339	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7617727	0.86[CHB][hapmap]
rs7631556	0.95[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap]
rs7636413	0.85[CEU][hapmap]
rs7643340	0.87[CEU][hapmap]
rs885094	0.81[EUR][1000 genomes]
rs924517	1.00[CHB][hapmap]
rs9838724	0.80[ASN][1000 genomes]
rs9857875	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs9867618	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs9871290	0.86[CHB][hapmap]
rs9883103	0.81[CHB][hapmap]
rs988587	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs988588	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9990136	1.00[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156919400-156929000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:156919600-156928800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:156920200-156929600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr3:156922200-156925000	Enhancers	Osteobl	bone
5	chr3:156922400-156923000	Enhancers	Stomach Smooth Muscle	stomach
6	chr3:156922400-156923200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:156922400-156923400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:156922400-156923400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:156922400-156923400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:156922400-156923400	Enhancers	Fetal Heart	heart
11	chr3:156922400-156923600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:156922400-156923600	Enhancers	HUVEC	blood vessel
13	chr3:156922400-156923600	Enhancers	NHDF-Ad	bronchial
14	chr3:156922600-156923000	Enhancers	Colon Smooth Muscle	Colon
15	chr3:156922800-156923400	Enhancers	Fetal Muscle Leg	muscle
16	chr3:156922800-156923400	Enhancers	HSMMtube	muscle
17	chr3:156922800-156923600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:156922800-156923800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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