Variant report

Variant	rs4680359
Chromosome Location	chr3:157085697-157085698
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1027603	0.94[CHB][hapmap]
rs10936085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936086	0.94[CHB][hapmap]
rs10936087	0.94[CHB][hapmap]
rs12486427	0.94[CHB][hapmap]
rs12496879	0.94[CHB][hapmap]
rs12629552	0.83[ASN][1000 genomes]
rs12638732	0.94[CHB][hapmap]
rs1456097	0.94[CHB][hapmap]
rs1456108	0.88[CHB][hapmap]
rs1500916	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1500920	0.94[CHB][hapmap]
rs1545596	0.88[CHB][hapmap]
rs1546261	0.94[CHB][hapmap]
rs1563420	0.88[CHB][hapmap]
rs1568609	0.94[CHB][hapmap];0.85[YRI][hapmap]
rs1568612	0.88[CHB][hapmap]
rs1585080	0.94[CHB][hapmap]
rs1824058	0.83[CHB][hapmap]
rs1840668	0.94[CHB][hapmap]
rs1840673	0.88[CHB][hapmap]
rs1869859	0.88[CHB][hapmap]
rs1965246	0.88[CHB][hapmap]
rs2047649	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs2088815	0.82[CHB][hapmap]
rs2124497	0.88[CHB][hapmap]
rs2168430	0.88[CHB][hapmap]
rs2168431	0.88[CHB][hapmap]
rs2305620	0.83[CHB][hapmap]
rs3816528	0.94[CHB][hapmap]
rs4640512	0.94[CHB][hapmap]
rs4679793	0.83[CHB][hapmap]
rs4680351	0.88[CHB][hapmap]
rs4680360	0.89[CHB][hapmap]
rs6441121	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs6441126	0.88[CHB][hapmap]
rs6441128	0.94[CHB][hapmap]
rs6441129	0.88[CHB][hapmap]
rs6776647	0.88[CHB][hapmap]
rs6801110	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs6803628	0.88[CHB][hapmap]
rs7614339	0.93[CHB][hapmap]
rs7617727	0.94[CHB][hapmap]
rs7623173	0.88[CHB][hapmap]
rs7631556	0.94[CHB][hapmap]
rs7639254	0.94[CHB][hapmap]
rs924517	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs9857875	1.00[CHB][hapmap]
rs9867618	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs9871290	0.94[CHB][hapmap]
rs9878474	0.83[CHB][hapmap]
rs9883103	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883822	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs988587	0.88[CHB][hapmap]
rs988588	0.94[CHB][hapmap]
rs9990136	0.94[CHB][hapmap]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157066000-157086800	Weak transcription	Pancreas	Pancrea
2	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:157078800-157091600	Weak transcription	NH-A	brain
4	chr3:157079200-157087600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:157081600-157091600	Weak transcription	NHLF	lung
6	chr3:157081600-157093800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:157083600-157086800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:157083600-157086800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:157083600-157087000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:157083600-157087000	Weak transcription	A549	lung
11	chr3:157083600-157105800	Weak transcription	HSMM	muscle
12	chr3:157083800-157087000	Weak transcription	NHDF-Ad	bronchial
13	chr3:157083800-157087800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:157083800-157092800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:157083800-157093600	Weak transcription	Fetal Brain Male	brain
16	chr3:157084000-157085800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:157084000-157087000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:157084000-157087000	Weak transcription	HUVEC	blood vessel
19	chr3:157084200-157087000	Weak transcription	Osteobl	bone
20	chr3:157084800-157086000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:157084800-157087200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:157085000-157091600	Weak transcription	Aorta	Aorta
23	chr3:157085200-157085800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:157085200-157086400	Enhancers	Fetal Lung	lung
25	chr3:157085400-157086000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links