Variant report

Variant	rs12629552
Chromosome Location	chr3:157086630-157086631
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1027603	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10936085	0.83[ASN][1000 genomes]
rs10936086	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10936087	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12486427	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12492874	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12492929	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12496879	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12636038	0.82[EUR][1000 genomes]
rs12638732	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13087207	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1456097	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1456105	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1456106	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1456108	0.82[EUR][1000 genomes]
rs1500916	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1500919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1500920	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1545596	0.82[EUR][1000 genomes]
rs1546261	0.88[ASN][1000 genomes]
rs1563420	0.82[EUR][1000 genomes]
rs1568609	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1585080	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1840668	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1840673	0.82[EUR][1000 genomes]
rs1869859	0.82[EUR][1000 genomes]
rs1965246	0.81[EUR][1000 genomes]
rs2047649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085315	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2124497	0.82[EUR][1000 genomes]
rs2168430	0.82[EUR][1000 genomes]
rs2168431	0.82[EUR][1000 genomes]
rs2305622	0.82[EUR][1000 genomes]
rs35004310	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3816528	0.83[ASN][1000 genomes]
rs4435581	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4640512	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4679793	0.82[EUR][1000 genomes]
rs4680358	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4680359	0.83[ASN][1000 genomes]
rs4680360	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6441124	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6441126	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441127	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441128	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6780399	0.88[ASN][1000 genomes]
rs6801110	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs722484	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7617727	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7618737	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7623173	0.82[EUR][1000 genomes]
rs7629293	0.82[EUR][1000 genomes]
rs7631556	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7639254	0.83[ASN][1000 genomes]
rs885094	0.88[ASN][1000 genomes]
rs9857875	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9871290	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9878474	0.82[EUR][1000 genomes]
rs9883103	0.83[ASN][1000 genomes]
rs988587	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs988588	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9990136	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157066000-157086800	Weak transcription	Pancreas	Pancrea
2	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:157078800-157091600	Weak transcription	NH-A	brain
4	chr3:157079200-157087600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:157081600-157091600	Weak transcription	NHLF	lung
6	chr3:157081600-157093800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:157083600-157086800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:157083600-157086800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:157083600-157087000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:157083600-157087000	Weak transcription	A549	lung
11	chr3:157083600-157105800	Weak transcription	HSMM	muscle
12	chr3:157083800-157087000	Weak transcription	NHDF-Ad	bronchial
13	chr3:157083800-157087800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:157083800-157092800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:157083800-157093600	Weak transcription	Fetal Brain Male	brain
16	chr3:157084000-157087000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:157084000-157087000	Weak transcription	HUVEC	blood vessel
18	chr3:157084200-157087000	Weak transcription	Osteobl	bone
19	chr3:157084800-157087200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:157085000-157091600	Weak transcription	Aorta	Aorta
21	chr3:157086000-157087400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:157086200-157087200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:157086200-157087800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:157086200-157091600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:157086400-157086800	Weak transcription	Fetal Lung	lung
26	chr3:157086400-157090200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links